# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dduA	387	2.888		
1ztxE	108	2.899	b.1.18.4	125658
1b9dA	163	4.217	c.55.3.2	33649
1yrkA	126	7.593		
1ei5A	520	9.650	b.61.3.1,b.61.3.1,e.3.1.1	27418,27419,42772
1itg	166	13.70		
1bl3A	160	17.58	c.55.3.2	33655
1exqA	154	18.69	c.55.3.2	33646
1kk1A	410	20.86	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
1hyvA	166	22.43	c.55.3.2	61424
2ns2A	242	22.87		
2o3hA	285	23.00		
1pz7A	204	23.02	b.29.1.4	95405
2b5iB	214	24.73	b.1.2.1,b.1.2.1	127896,127897
2hbtA	247	25.34		
1m8uA	173	32.82	b.11.1.1,b.11.1.1	91233,91234
2fiyA	309	35.65	e.59.1.1	133540
2pywA	420	37.87		
2pulA	397	39.51		
1r6xA	395	43.21	b.122.1.3,c.26.1.5	97167,97168
2i53A	258	45.36		
2v24A	208	47.16		
2b3gA	123	48.19	b.40.4.3	127786
2h3kA	144	48.80		
1zxqA	192	50.57	b.1.1.3,b.1.1.4	21657,21693
2dm6A	333	53.59	b.35.1.2,c.2.1.1	131567,131568
2pgcA	207	55.54		
3b3qE	197	55.56		
2debA	653	56.82		
2h62C	129	57.11	g.7.1.3	136179
1tqzA	133	57.23	b.55.1.11	119327
2h1zA	39	60.12		
1oe1A	336	65.04	b.6.1.3,b.6.1.3	86891,86892
2dbjA	124	66.74		
2p9mA	138	66.75		
1gsjA	258	68.36	c.73.1.2	70397
487dH	224	69.09	i.1.1.2	45835
1ds1A	324	69.65	b.82.2.2	28127
1mp4A	292	69.98	c.68.1.6	79376
2j3hA	345	71.94		
1uc8A	280	75.68	c.30.1.6,d.142.1.7	99165,99166
1nycA	111	78.86	b.61.2.2	92336
2dnjA	260	78.92	d.151.1.1	41790
2oryA	346	83.64		
1f02T	66	85.17	j.67.1.1	46360
2oizA	361	85.81		
2g19A	244	87.84		
1zelA	298	87.93		
2gjgA	248	88.20