# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dduA	387	2.406		
1ztxE	108	2.752	b.1.18.4	125658
1b9dA	163	6.517	c.55.3.2	33649
1yrkA	126	7.372		
2hbtA	247	15.79		
2dbjA	124	16.35		
1ei5A	520	19.32	b.61.3.1,b.61.3.1,e.3.1.1	27418,27419,42772
1kk1A	410	21.41	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
1ds1A	324	22.45	b.82.2.2	28127
2b5iB	214	24.01	b.1.2.1,b.1.2.1	127896,127897
1hyvA	166	30.35	c.55.3.2	61424
1itg	166	31.12		
2g19A	244	33.87		
2ns2A	242	35.99		
2pywA	420	37.58		
1nycA	111	37.90	b.61.2.2	92336
1exqA	154	38.86	c.55.3.2	33646
2fiyA	309	39.64	e.59.1.1	133540
2dm6A	333	40.92	b.35.1.2,c.2.1.1	131567,131568
1oe1A	336	41.04	b.6.1.3,b.6.1.3	86891,86892
1r6xA	395	41.89	b.122.1.3,c.26.1.5	97167,97168
1bl3A	160	42.56	c.55.3.2	33655
2pgcA	207	44.02		
2debA	653	44.21		
2j3hA	345	44.51		
2glzA	153	44.69	d.81.3.1	135348
2odiA	238	46.29		
2b3gA	123	47.95	b.40.4.3	127786
1xrkA	124	50.45	d.32.1.2	115881
2oryA	346	54.01		
2gjgA	248	54.93		
2i53A	258	57.39		
2hs3A	603	57.98	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
1pz7A	204	58.55	b.29.1.4	95405
1g8fA	511	62.15	b.122.1.3,c.26.1.5,c.37.1.15	60348,60349,60350
1ohpA	125	62.20	d.17.4.3	118702
487dH	224	63.66	i.1.1.2	45835
2h4tA	626	65.94		
1mooA	260	66.56	b.74.1.1	79359
1t3gA	159	67.97		
1ywxA	102	68.05	d.12.1.3	124165
2qy0A	159	68.20		
1mp4A	292	68.70	c.68.1.6	79376
1m8uA	173	69.82	b.11.1.1,b.11.1.1	91233,91234
2dnjA	260	70.52	d.151.1.1	41790
2j6bA	109	71.60	d.321.1.1	138078
2pulA	397	72.09		
2oi2A	292	72.34		
2h62C	129	75.24	g.7.1.3	136179
1ee2A	373	77.97	b.35.1.2,c.2.1.1	24663,29679
2o3hA	285	79.36		
1tqzA	133	80.18	b.55.1.11	119327
1zelA	298	80.54		
2og5A	357	81.36		
2v94A	107	81.72		
2v24A	208	83.44		
1f02T	66	84.78	j.67.1.1	46360
1uufA	369	86.32	b.35.1.2,c.2.1.1	100006,100007