# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hbtA 247 3.809 1b9dA 163 4.509 c.55.3.2 33649 487dH 224 5.038 i.1.1.2 45835 1ei5A 520 6.295 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1ohpA 125 6.452 d.17.4.3 118702 2g19A 244 6.795 1yrkA 126 6.886 2v24A 208 7.408 1f02T 66 9.129 j.67.1.1 46360 2p9mA 138 9.271 2odiA 238 9.327 2pgcA 207 10.35 2b5iB 214 11.76 b.1.2.1,b.1.2.1 127896,127897 1bl3A 160 11.99 c.55.3.2 33655 1wchA 315 12.07 c.45.1.2 114508 1itg 166 12.25 2ra2A 64 12.64 1ztxE 108 13.22 b.1.18.4 125658 2h3bA 494 13.24 2j6bA 109 13.66 d.321.1.1 138078 2dbjA 124 13.89 1ds1A 324 14.77 b.82.2.2 28127 1hyvA 166 16.35 c.55.3.2 61424 1exqA 154 16.66 c.55.3.2 33646 1ad2A 228 16.78 e.24.1.1 43353 2gjgA 248 17.97 2b3gA 123 18.20 b.40.4.3 127786 1oe1A 336 18.70 b.6.1.3,b.6.1.3 86891,86892 2nvhA 153 19.73 b.42.1.2 138630 1p0fA 373 21.83 b.35.1.2,c.2.1.1 87642,87643 1s0aA 429 21.95 c.67.1.4 98263 2dnjA 260 23.07 d.151.1.1 41790 2qv8A 159 23.55 2ef7A 133 23.58 2pywA 420 24.72 2glzA 153 25.08 d.81.3.1 135348 2debA 653 25.59 3bduA 62 26.77 1xniA 118 27.32 b.34.9.1,b.34.9.1 115582,115583 1g3gA 164 27.79 b.26.1.2 23918 1jotA 133 28.03 2ns2A 242 28.11 1m26A 133 28.38 2czlA 272 32.24 c.94.1.1 131055 1b2pA 119 32.63 b.78.1.1 27998 2h3kA 144 33.05 1ee2A 373 36.84 b.35.1.2,c.2.1.1 24663,29679 1zelA 298 37.45 1u69A 163 37.93 d.32.1.7 107699 1m8uA 173 38.32 b.11.1.1,b.11.1.1 91233,91234 2jhfA 374 39.23 b.35.1.2,c.2.1.1 138314,138315 1r6xA 395 39.46 b.122.1.3,c.26.1.5 97167,97168 1bpwA 503 40.60 c.82.1.1 35365 1d0nA 729 41.09 d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1 40834,40835,40836,40837,40838,40839 2h4tA 626 42.23 2pulA 397 43.95 1op4A 159 44.86 b.1.6.1 93397 3pcgA 200 44.97 b.3.6.1 22647 1huxA 270 45.46 c.55.1.5 61278 1n8kA 374 45.92 b.35.1.2,c.2.1.1 80298,80299 1yrrA 382 47.19 b.92.1.5,c.1.9.10 123935,123936 2jn0A 61 47.66 1p4pA 145 48.40 b.76.1.1 94112 1ji8A 111 48.87 d.203.1.1 66733 3bqaA 148 51.35 2p1zA 180 52.09 2ohxA 374 52.31 b.35.1.2,c.2.1.1 24669,29685 1iz0A 302 52.52 b.35.1.2,c.2.1.1 83821,83822 1g3mA 294 52.91 c.37.1.5 83268 2cghA 268 53.59 1qtyT 101 53.68 b.1.1.4 21769 1mgpA 313 53.73 c.119.1.1 79098 2h1zA 39 54.37 2igiA 180 55.84 1aquA 297 56.21 c.37.1.5 31942 1ppjF 110 56.47 f.27.1.1 104262 1xrkA 124 56.81 d.32.1.2 115881 1n7zA 334 58.72 b.127.1.1 85380 2dduA 387 59.25 2ps1A 226 60.75 1e19A 314 61.74 c.73.1.1 34967 2hs3A 603 61.93 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1ea2A 131 61.95 d.17.4.3 64860 1axgA 374 63.45 b.35.1.2,c.2.1.1 24691,29707 2pwwA 127 64.96 1dmmA 131 65.02 d.17.4.3 38114 1bb9A 115 65.22 b.34.2.1 24554 1danU 121 65.34 b.1.2.1 21954 1kk1A 410 65.75 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1g7oA 215 65.77 a.45.1.1,c.47.1.5 60332,60333 2yziA 138 66.66 1mp4A 292 67.18 c.68.1.6 79376 1yfnA 118 67.31 b.136.1.1 123080 1vj0A 380 68.54 b.35.1.2,c.2.1.1 100786,100787 1g8fA 511 72.20 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1ohvA 472 72.89 c.67.1.4 93031 1gmeA 151 73.80 b.15.1.1 65305 1lurA 339 77.05 b.30.5.4 84717 1yaxA 153 77.50 2qy0A 159 77.67 3csvA 333 78.55 2j23A 121 79.33 2o3hA 285 79.39 1gsjA 258 79.84 c.73.1.2 70397 1a71A 374 80.25 b.35.1.2,c.2.1.1 24673,29689 3bfxA 296 80.38 1tqzA 133 81.77 b.55.1.11 119327 2fpeA 62 81.92 1czyA 168 82.34 b.8.1.1,h.1.2.1 23220,45427 1zbmA 280 83.12 c.94.1.1 124858 1wndA 495 85.02 c.82.1.1 114751 2geyA 158 86.34 2bjkA 516 88.29 3bljA 221 89.45