# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ztxE	108	5.348	b.1.18.4	125658
2dduA	387	6.137		
1b9dA	163	6.263	c.55.3.2	33649
1yrkA	126	6.405		
2o3hA	285	23.98		
1ei5A	520	24.28	b.61.3.1,b.61.3.1,e.3.1.1	27418,27419,42772
1bl3A	160	24.86	c.55.3.2	33655
1itg	166	25.62		
2v24A	208	27.88		
2ns2A	242	31.57		
1hyvA	166	31.82	c.55.3.2	61424
2h1zA	39	33.67		
1exqA	154	36.52	c.55.3.2	33646
2hbtA	247	37.48		
1pz7A	204	39.76	b.29.1.4	95405
2j23A	121	42.78		
2p9mA	138	44.25		
1x2gA	337	44.41		
3b3qE	197	44.59		
2dbjA	124	48.91		
1xrkA	124	52.40	d.32.1.2	115881
1wchA	315	52.46	c.45.1.2	114508
2hs3A	603	52.76	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
1uc8A	280	54.53	c.30.1.6,d.142.1.7	99165,99166
1nvmB	312	57.14	c.2.1.3,d.81.1.1	86251,86252
2b5iB	214	57.55	b.1.2.1,b.1.2.1	127896,127897
1s0aA	429	57.71	c.67.1.4	98263
2pulA	397	61.01		
2pywA	420	63.13		
1tqzA	133	63.63	b.55.1.11	119327
2b3gA	123	64.46	b.40.4.3	127786
2oizA	361	67.51		
2h3kA	144	71.54		
2hjgA	436	73.00		
2fiyA	309	77.74	e.59.1.1	133540
2g19A	244	82.05		
1t8tA	271	82.10	c.37.1.5	106685
1kk1A	410	82.64	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
2i53A	258	85.78		
2bemA	170	86.32	b.1.18.2	116698
2debA	653	88.29		
1nycA	111	89.23	b.61.2.2	92336