# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dduA	387	1.534		
1ztxE	108	3.453	b.1.18.4	125658
1b9dA	163	3.763	c.55.3.2	33649
1yrkA	126	5.823		
1ei5A	520	11.71	b.61.3.1,b.61.3.1,e.3.1.1	27418,27419,42772
1pz7A	204	15.61	b.29.1.4	95405
2v24A	208	17.44		
2hbtA	247	18.33		
2ns2A	242	18.42		
2pulA	397	22.08		
2pywA	420	22.57		
1hyvA	166	23.07	c.55.3.2	61424
3b3qE	197	26.04		
1bl3A	160	26.38	c.55.3.2	33655
1itg	166	27.15		
2hs3A	603	27.30	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
2o3hA	285	30.74		
1s0aA	429	32.31	c.67.1.4	98263
1kk1A	410	32.83	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
1exqA	154	33.39	c.55.3.2	33646
2fiyA	309	38.10	e.59.1.1	133540
2b5iB	214	40.37	b.1.2.1,b.1.2.1	127896,127897
2p9mA	138	42.96		
2i53A	258	51.00		
2h1zA	39	52.30		
2dbjA	124	53.38		
2j3hA	345	58.01		
2g19A	244	60.13		
1zxqA	192	60.67	b.1.1.3,b.1.1.4	21657,21693
2dm6A	333	61.80	b.35.1.2,c.2.1.1	131567,131568
1wchA	315	64.30	c.45.1.2	114508
1tqzA	133	65.92	b.55.1.11	119327
2oryA	346	67.84		
2owlA	303	68.38		
2h3kA	144	69.66		
2ayuA	417	70.69	d.305.1.1	127571
1t8tA	271	73.06	c.37.1.5	106685
2oizA	361	74.67		
1oe1A	336	74.86	b.6.1.3,b.6.1.3	86891,86892
1wlyA	333	79.36		
1x2gA	337	79.56		
2debA	653	81.73		
1zupA	315	84.37	c.55.3.11	125681
2odiA	238	87.10