# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dduA	387	1.351		
1ztxE	108	3.364	b.1.18.4	125658
1b9dA	163	10.91	c.55.3.2	33649
1yrkA	126	17.76		
2dbjA	124	18.19		
2hs3A	603	18.19	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
2ns2A	242	20.16		
2v24A	208	23.37		
1kk1A	410	24.41	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
2hbtA	247	29.45		
1pz7A	204	30.08	b.29.1.4	95405
1ei5A	520	30.08	b.61.3.1,b.61.3.1,e.3.1.1	27418,27419,42772
3bfxA	296	30.97		
2o3hA	285	32.89		
2b5iB	214	38.41	b.1.2.1,b.1.2.1	127896,127897
2fiyA	309	39.92	e.59.1.1	133540
1tqzA	133	44.99	b.55.1.11	119327
2pywA	420	47.44		
2odiA	238	47.86		
3b3qE	197	49.18		
1g3mA	294	52.95	c.37.1.5	83268
2i53A	258	57.10		
2pulA	397	57.56		
2j3hA	345	58.68		
1hyvA	166	60.16	c.55.3.2	61424
2h3kA	144	63.38		
2b3gA	123	67.71	b.40.4.3	127786
1aquA	297	69.44	c.37.1.5	31942
2p9mA	138	69.62		
2debA	653	69.83		
2h1zA	39	73.64		
2dm6A	333	78.58	b.35.1.2,c.2.1.1	131567,131568
1wchA	315	78.78	c.45.1.2	114508
1s0aA	429	79.23	c.67.1.4	98263
2gjgA	248	80.84		
3bljA	221	81.36		
1qhhA	167	81.54	c.37.1.19	32393
2dnjA	260	82.29	d.151.1.1	41790
2oizA	361	83.14		
2oryA	346	85.18		
2g19A	244	85.43		
1zupA	315	85.76	c.55.3.11	125681
1m8uA	173	86.73	b.11.1.1,b.11.1.1	91233,91234