# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1t8tA	271	18.81	c.37.1.5	106685
2bw2A	140	20.24		
2fiyA	309	23.18	e.59.1.1	133540
1uc8A	280	26.50	c.30.1.6,d.142.1.7	99165,99166
2c6cA	707	31.07	a.48.2.1,c.8.4.1,c.56.5.5	129989,129990,129991
1m8uA	173	35.75	b.11.1.1,b.11.1.1	91233,91234
1uwwA	191	39.19	b.18.1.23	108079
3bevB	99	39.90		
1yrkA	126	41.43		
1b55A	169	44.52	b.55.1.1	26963
1cfrA	285	47.08	c.52.1.7	33312
2dduA	387	47.14		
2j23A	121	50.36		
2z14A	133	55.34		
3bfxA	296	69.39		
2dytA	312	74.10		
1b9dA	163	77.62	c.55.3.2	33649
1zpvA	91	78.96	d.58.18.7	125475
2gwfA	157	81.15	c.46.1.4	135802
2hjgA	436	86.43		
1x2gA	337	86.67