# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pnwA 380 3.985 1yrkA 126 4.816 1bdyA 123 8.633 b.7.1.1 23190 1eziA 228 9.107 c.68.1.13 34512 1rxzA 245 12.43 d.131.1.2,d.131.1.2 98067,98068 2b79A 144 16.01 2pjsA 119 16.33 1phpA 394 17.07 c.86.1.1 35452 1suuA 312 17.27 b.68.10.1 99006 2j05A 65 17.44 1i8dA 213 18.04 b.43.4.3,b.43.4.3 61953,61954 2g5dA 422 18.36 1bb9A 115 21.18 b.34.2.1 24554 1mai 131 22.89 1xuvA 178 23.32 d.129.3.5 116069 1a49A 530 27.11 b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 1zx8A 136 27.83 b.62.1.3 125764 2z2nA 299 30.97 1hkvA 453 31.33 b.49.2.3,c.1.6.1 83559,83560 1fwyA 331 31.39 b.81.1.4,c.68.1.5 28064,34522 1ugpB 226 31.68 b.34.4.4 107832 2a08A 60 31.87 1ovaA 386 32.63 e.1.1.1 42619 1f60A 458 35.38 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1cskA 71 35.44 b.34.2.1 24513 2a28A 54 40.62 2bikB 313 41.35 1k5nB 100 43.80 b.1.1.2 77268 1xwsA 313 44.67 d.144.1.7 116133 1agdB 99 45.37 b.1.1.2 20742 2g6fX 59 47.07 1maiA 131 47.37 b.55.1.1 26951 2g50A 530 50.38 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1ootA 60 50.48 b.34.2.1 93386 1f9zA 135 51.13 d.32.1.1 38484 1oebA 62 51.15 b.34.2.1 86909 1ckaA 57 51.19 b.34.2.1 24459 2ehzA 302 51.24 2or2A 296 51.65 2gncA 60 51.80 2ak5A 64 52.82 1ao7B 100 53.65 b.1.1.2 20697 1w9aA 147 54.17 b.45.1.1 114408 1jnyA 435 55.90 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2p3eA 420 56.76 1zq1C 633 58.99 a.182.1.2,d.74.4.1,d.128.1.5 125493,125494,125495 1u06A 62 61.33 b.34.2.1 119404 1fa8A 135 61.87 d.32.1.1 38486 2atmA 331 62.29 2hw6A 307 63.02 1a3c 181 63.50 2bh1A 250 65.31 c.55.1.11,c.55.1.11 128506,128507 1s4qA 228 65.37 c.37.1.1 98507 2vgiA 528 67.26 2o90A 122 67.69 1ewjA 126 68.82 d.32.1.2 59526 2b5wA 357 70.39 1djrD 103 71.69 b.40.2.1 24865 1zx6A 58 72.62 1wp5A 323 73.39 b.68.10.1 114780 2o31A 67 73.62 1q6hA 224 74.69 d.26.1.1 95975 2j66A 428 76.20 1ncwL 219 76.81 b.1.1.1,b.1.1.2 85557,85558 1ireB 228 77.10 b.34.4.4 76770 1azgB 67 77.16 b.34.2.1 24471 2raaA 204 79.96 1nrzA 164 81.17 c.38.1.1 86131 1bqkA 124 82.30 b.6.1.1 22889 1zi0A 307 82.34 1x31C 206 82.49 1kobA 387 82.71 d.144.1.7 41640 1aboA 62 82.82 b.34.2.1 24474 2qorA 204 83.33 2glzA 153 83.84 d.81.3.1 135348 1b07A 59 84.33 b.34.2.1 24461 1hrhA 136 84.94 c.55.3.1 33577 1genA 218 85.43 b.66.1.1 27536 2fexA 188 85.80 c.23.16.2 133354 1noaA 113 87.02 b.1.7.1 22208 1k2pA 263 87.75 d.144.1.7 72012 1rvkA 382 88.22 c.1.11.2,d.54.1.1 97928,97929 1ds1A 324 88.98 b.82.2.2 28127 1jegA 83 89.12 b.34.2.1 66610 1fsgA 233 89.46 c.61.1.1 34029