# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.1736		
1v47A	349	1.448	b.122.1.3,c.26.1.5	100292,100293
1i52A	236	8.487	c.68.1.13	61767
2q7nA	488	8.571		
1h7eA	245	24.35	c.68.1.13	60717
1fxoA	293	24.93	c.68.1.6	34524
2cx4A	164	25.71	c.47.1.10	130973
1h5rA	293	25.96	c.68.1.6	65623
1jyoA	130	27.46	d.198.1.1	67483
1lvwA	295	29.58	c.68.1.6	84723
1v74A	107	33.77	d.243.1.1	100442
1jykA	254	35.84	c.68.1.13	67458
2nwfA	141	36.40		
2pgcA	207	38.88		
2geyA	158	39.92		
2v94A	107	40.40		
2p9rA	102	40.67		
1sqhA	312	41.63	d.108.1.5	98966
2e4qA	109	42.34		
2jo6A	113	44.48		
2rl8A	154	48.26		
2p7oA	133	48.40		
1dgwX	79	49.19	b.82.1.2	28091
2f06A	144	49.58	d.58.18.11,d.58.18.11	132652,132653
2p9wA	334	49.90		
1xuvA	178	49.98	d.129.3.5	116069
2fgqX	332	50.26	f.4.3.1	133439
2j7qA	232	50.52		
2ggoA	401	50.63		
1nycA	111	50.80	b.61.2.2	92336
2oaaA	249	53.69		
3brkX	420	55.84		
3cpnA	330	59.53		
2b3wA	168	59.86	d.336.1.1	127800
2hpuA	175	61.48		
2ywiA	196	61.67		
1nwwA	149	63.44	d.17.4.8	86306
1tvgA	153	66.56	b.18.1.9	112683
2q8oA	136	68.34		
2ijzA	428	68.54		
1cxqA	162	68.69	c.55.3.2	33621
1wy2A	351	69.18		
2gvkA	317	69.47	d.58.4.14	135782
3brgC	427	69.90		
1q2lA	939	70.20	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2h7dA	101	73.83		
2bonA	332	74.37		
1fqtA	112	75.43	b.33.1.1	24441
1q98A	165	76.27	c.47.1.10	96253
2b3gA	123	77.31	b.40.4.3	127786
2h8eA	120	79.44		
1wh2A	78	79.97	d.76.1.1	114630
3c0dA	119	82.57		
1bowA	159	82.90	d.60.1.1	39528
2bv2A	83	85.87		
3bk5A	237	88.46		
1yr2A	741	88.91