# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.1808		
1v47A	349	5.665	b.122.1.3,c.26.1.5	100292,100293
1i52A	236	8.199	c.68.1.13	61767
1dgwX	79	10.15	b.82.1.2	28091
2q7nA	488	14.16		
1q98A	165	18.26	c.47.1.10	96253
1jykA	254	24.65	c.68.1.13	67458
2cx4A	164	31.62	c.47.1.10	130973
1fqtA	112	31.70	b.33.1.1	24441
1fxoA	293	36.02	c.68.1.6	34524
1jyoA	130	36.83	d.198.1.1	67483
2zgyA	320	37.43		
1vc4A	254	39.00	c.1.2.4	100557
2p9wA	334	40.65		
1h7eA	245	40.98	c.68.1.13	60717
2e4qA	109	40.98		
1h5rA	293	41.74	c.68.1.6	65623
2j7qA	232	44.12		
2cirA	297	44.38		
1wy2A	351	44.43		
2ywiA	196	44.60		
1bowA	159	45.11	d.60.1.1	39528
1yfsA	465	45.23	a.203.1.1,d.104.1.1	123088,123089
2ijzA	428	45.62		
2h7dA	101	47.46		
2petA	231	50.30		
2f06A	144	50.30	d.58.18.11,d.58.18.11	132652,132653
1xm3A	264	50.39	c.1.31.1	115461
2geyA	158	51.62		
1v74A	107	52.17	d.243.1.1	100442
2q8oA	136	52.52		
3c0dA	119	55.28		
2oaaA	249	60.78		
2rl8A	154	64.16		
2nwfA	141	66.58		
1lvwA	295	72.45	c.68.1.6	84723
2iqiA	192	77.75		
1trb	320	81.37		
2b3wA	168	81.45	d.336.1.1	127800
2v94A	107	83.13		
1a6sA	87	85.39	a.61.1.4	18134
1nycA	111	88.53	b.61.2.2	92336
1tvgA	153	88.66	b.18.1.9	112683