# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.1457		
1v47A	349	4.723	b.122.1.3,c.26.1.5	100292,100293
2q7nA	488	7.909		
1q98A	165	9.517	c.47.1.10	96253
1i52A	236	14.90	c.68.1.13	61767
1xm3A	264	15.36	c.1.31.1	115461
1dgwX	79	17.55	b.82.1.2	28091
2cx4A	164	18.07	c.47.1.10	130973
2geyA	158	25.00		
2b3wA	168	33.38	d.336.1.1	127800
2cirA	297	36.26		
1wy2A	351	36.85		
1vc4A	254	38.25	c.1.2.4	100557
1jykA	254	40.86	c.68.1.13	67458
2ijzA	428	40.95		
1zxfA	155	45.53	d.129.3.5	125771
2iqiA	192	46.31		
2ywiA	196	47.00		
2p9wA	334	47.31		
1tocR	120	48.55	g.8.1.2,g.8.1.2	44558,44559
1h7eA	245	49.32	c.68.1.13	60717
1h5rA	293	50.10	c.68.1.6	65623
1fxoA	293	51.91	c.68.1.6	34524
2htmA	268	54.30		
2nnwA	376	54.51		
2oaaA	249	58.25		
1nwwA	149	60.16	d.17.4.8	86306
2hpuA	175	61.30		
1bowA	159	61.43	d.60.1.1	39528
2b3gA	123	64.19	b.40.4.3	127786
2zgyA	320	64.53		
2p7oA	133	70.57		
1jyoA	130	70.71	d.198.1.1	67483
2bskB	90	72.10	g.83.1.1	129091
2a6qA	86	72.57	d.306.1.1	126293
2jv8A	73	72.93		
2p9rA	102	73.69		
1lvwA	295	74.93	c.68.1.6	84723
1ys5A	164	76.91	f.4.1.3	123956
2q8oA	136	77.49		
2petA	231	78.35		
2h7dA	101	78.37		
1xuvA	178	78.48	d.129.3.5	116069
1trb	320	80.74		
1dpeA	507	88.76	c.94.1.1	35799
1t06A	235	89.62	a.118.1.17	106194