# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.1967		
1v47A	349	2.871	b.122.1.3,c.26.1.5	100292,100293
1xm3A	264	10.66	c.1.31.1	115461
1wy2A	351	11.69		
1dgwX	79	13.97	b.82.1.2	28091
1i52A	236	14.75	c.68.1.13	61767
1q98A	165	16.31	c.47.1.10	96253
2q7nA	488	19.83		
2cx4A	164	24.20	c.47.1.10	130973
2geyA	158	24.82		
2htmA	268	34.63		
1nwwA	149	38.94	d.17.4.8	86306
2p7oA	133	40.17		
1wh2A	78	40.66	d.76.1.1	114630
1v74A	107	40.68	d.243.1.1	100442
1jykA	254	41.13	c.68.1.13	67458
2e4qA	109	45.03		
2jv8A	73	45.12		
2nwfA	141	45.39		
1ys5A	164	46.58	f.4.1.3	123956
2q8oA	136	46.84		
2b3wA	168	47.42	d.336.1.1	127800
2ijzA	428	47.51		
2zgyA	320	48.76		
2pgcA	207	51.37		
2nnwA	376	51.90		
2h7dA	101	54.41		
2iqiA	192	55.26		
1vc4A	254	55.30	c.1.2.4	100557
2pw8I	65	56.14		
2ia0A	171	59.01		
2a6qA	86	59.04	d.306.1.1	126293
1fqtA	112	61.80	b.33.1.1	24441
2oaaA	249	61.80		
1h5rA	293	61.81	c.68.1.6	65623
1h7eA	245	61.82	c.68.1.13	60717
1bowA	159	62.13	d.60.1.1	39528
3c0dA	119	64.83		
1fxoA	293	75.80	c.68.1.6	34524
1gs5A	258	75.99	c.73.1.2	70395
2j7qA	232	77.31		
2ywiA	196	79.33		
2b3gA	123	79.56	b.40.4.3	127786
1a6sA	87	81.29	a.61.1.4	18134
1jyoA	130	85.70	d.198.1.1	67483
1xuvA	178	86.16	d.129.3.5	116069
2hpuA	175	87.43		
2djwA	92	88.80