# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	3.211		
1xm3A	264	4.030	c.1.31.1	115461
2htmA	268	8.596		
2yqcA	486	10.19		
1dgwX	79	20.31	b.82.1.2	28091
1oxwA	373	29.76	c.19.1.3	87539
2c6cA	707	37.38	a.48.2.1,c.8.4.1,c.56.5.5	129989,129990,129991
1wy2A	351	38.80		
2bw2A	140	40.43		
1jc4A	148	40.59	d.32.1.4	62863
1q98A	165	48.67	c.47.1.10	96253
2v94A	107	55.23		
3clqA	421	66.77		
1sqhA	312	71.94	d.108.1.5	98966
1vc4A	254	72.23	c.1.2.4	100557
2cx4A	164	75.91	c.47.1.10	130973
1i52A	236	78.51	c.68.1.13	61767
2ootA	709	81.29	a.48.2.1,c.8.4.1,c.56.5.5	139176,139177,139178
1ywxA	102	86.64	d.12.1.3	124165