# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	1.104		
1v47A	349	2.366	b.122.1.3,c.26.1.5	100292,100293
1dgwX	79	16.97	b.82.1.2	28091
2okcA	445	25.15		
1xuvA	178	26.38	d.129.3.5	116069
2dyqA	144	27.84		
1qg3A	195	29.36	b.1.2.1,b.1.2.1	21993,21994
1bl3A	160	30.07	c.55.3.2	33655
1exqA	154	30.50	c.55.3.2	33646
2bonA	332	33.51		
1itg	166	34.39		
1n7oA	721	39.94	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
3tdtA	274	41.65	b.81.1.2	28053
1xf1A	926	42.51		
1eguA	731	43.02	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
1uwcA	261	43.49	c.69.1.17	100101
2o56A	407	45.60		
1h4aX	173	46.68	b.11.1.1,b.11.1.1	83479,83480
1g8fA	511	52.67	b.122.1.3,c.26.1.5,c.37.1.15	60348,60349,60350
2rkvA	451	55.62		
1mp4A	292	57.08	c.68.1.6	79376
1cnvA	299	57.24	c.1.8.5	28989
2nxvA	249	58.35		
2oaaA	249	61.76		
2v94A	107	62.21		
1qwiA	143	62.40	d.227.1.1	96474
1v74A	107	65.04	d.243.1.1	100442
2aorA	223	65.71		
2vfrA	422	66.56		
2h4tA	626	70.75		
2p0lA	288	72.12		
2j7qA	232	73.56		
2pgcA	207	73.91		
1lvwA	295	75.02	c.68.1.6	84723
1xn9A	101	76.00	d.12.1.3	115578
1gs5A	258	78.33	c.73.1.2	70395
1wy2A	351	78.86		
2aexA	346	79.16		
2cviA	83	80.39		
1auuA	55	80.86	b.35.2.1	24769
2ijzA	428	81.13		
1m98A	317	87.57	a.175.1.1,d.17.4.6	78866,78867
1uqwA	509	87.79	c.94.1.1	99799
2iueA	212	89.28