# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	1.878		
1v47A	349	2.590	b.122.1.3,c.26.1.5	100292,100293
2qqzA	126	24.21		
2bonA	332	29.46		
2vfrA	422	35.49		
2cviA	83	35.75		
2dyqA	144	36.04		
2okcA	445	39.14		
1dgwX	79	40.05	b.82.1.2	28091
2rkvA	451	48.27		
1ywxA	102	49.53	d.12.1.3	124165
1qg3A	195	55.08	b.1.2.1,b.1.2.1	21993,21994
1n7oA	721	56.54	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1eguA	731	56.59	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2nxvA	249	57.13		
2v94A	107	57.51		
1qwiA	143	58.29	d.227.1.1	96474
1v74A	107	58.29	d.243.1.1	100442
2pgcA	207	58.67		
1h4aX	173	59.49	b.11.1.1,b.11.1.1	83479,83480
1xn9A	101	61.04	d.12.1.3	115578
1lvwA	295	63.83	c.68.1.6	84723
1x6vA	630	69.54	b.122.1.3,c.26.1.5,c.37.1.4	121755,121756,121757
1g8fA	511	72.50	b.122.1.3,c.26.1.5,c.37.1.15	60348,60349,60350
1uqwA	509	72.73	c.94.1.1	99799
2j7qA	232	73.59		
1mp4A	292	74.02	c.68.1.6	79376
1cnvA	299	78.22	c.1.8.5	28989
1u69A	163	78.90	d.32.1.7	107699
2oaaA	249	80.33		
1y0hA	105	80.53	d.58.4.11	116303
1xuvA	178	81.68	d.129.3.5	116069
1rm4A	337	85.08	c.2.1.3,d.81.1.1	105000,105001
1zx8A	136	85.51	b.62.1.3	125764