# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.7078		
1v47A	349	8.705	b.122.1.3,c.26.1.5	100292,100293
1dgwX	79	10.01	b.82.1.2	28091
3tdtA	274	18.85	b.81.1.2	28053
1uwcA	261	26.54	c.69.1.17	100101
1qwiA	143	29.68	d.227.1.1	96474
2okcA	445	29.73		
2dyqA	144	36.16		
1bl3A	160	39.43	c.55.3.2	33655
1eguA	731	40.65	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2h4tA	626	42.55		
2iueA	212	42.87		
2h7dA	101	46.53		
2nxvA	249	48.54		
1n7oA	721	49.89	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2rkvA	451	49.94		
2ijzA	428	52.00		
1exqA	154	52.26	c.55.3.2	33646
1itg	166	53.68		
2aorA	223	58.36		
1cnvA	299	59.24	c.1.8.5	28989
1sjwA	144	60.38	d.17.4.9	98899
1jfbA	404	62.90	a.104.1.1	66624
2vr4A	846	65.18		
1v74A	107	73.85	d.243.1.1	100442
1cpt	412	73.97		
1lt3A	240	75.30	d.166.1.1	42230
1qg3A	195	76.24	b.1.2.1,b.1.2.1	21993,21994
2v94A	107	77.39		
1dhr	241	78.19		
1pz7A	204	78.27	b.29.1.4	95405
2cviA	83	81.51		
2j7qA	232	82.59		
2oaaA	249	83.97		
1nycA	111	86.13	b.61.2.2	92336
1f02T	66	87.94	j.67.1.1	46360
2oplA	187	89.21		
1mp4A	292	89.41	c.68.1.6	79376