# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	1.024		
1v47A	349	9.349	b.122.1.3,c.26.1.5	100292,100293
1dgwX	79	15.38	b.82.1.2	28091
2okcA	445	23.62		
2dyqA	144	25.85		
3tdtA	274	26.44	b.81.1.2	28053
1qwiA	143	29.46	d.227.1.1	96474
1sjwA	144	42.53	d.17.4.9	98899
1uwcA	261	44.31	c.69.1.17	100101
2aorA	223	46.99		
1bl3A	160	48.43	c.55.3.2	33655
1jfbA	404	49.23	a.104.1.1	66624
2iueA	212	49.77		
2rkvA	451	51.99		
1exqA	154	55.73	c.55.3.2	33646
2nxvA	249	56.47		
1m7xA	617	56.94	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
2ijzA	428	60.00		
2vr4A	846	60.50		
1itg	166	63.95		
1cnvA	299	65.26	c.1.8.5	28989
1eguA	731	71.95	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2h4tA	626	72.89		
1olmA	403	75.08	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2h7dA	101	76.70		
2j7qA	232	77.80		
1v74A	107	78.02	d.243.1.1	100442
1a6sA	87	80.58	a.61.1.4	18134
1lfkA	398	82.37	a.104.1.1	77926
2oplA	187	85.67		
1cpt	412	85.68		
1bowA	159	88.05	d.60.1.1	39528
1n7oA	721	88.51	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2bonA	332	89.61