# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1v47A	349	7.634	b.122.1.3,c.26.1.5	100292,100293
2dyqA	144	8.420		
1nl1A	147	13.99	g.14.1.1,g.32.1.1	91949,91950
1cnvA	299	18.03	c.1.8.5	28989
1x4pA	66	22.59		
1dgwX	79	23.84	b.82.1.2	28091
3tdtA	274	25.15	b.81.1.2	28053
1wjnA	97	27.98	d.15.1.1	114703
3brnA	157	32.42		
2odiA	238	46.03		
1viaA	175	54.08	c.37.1.2	100754
1vddA	228	58.39	e.49.1.1	108519
1j1uA	306	61.43	c.26.1.1	83980
2fulA	178	73.68		
1b79A	119	76.04	a.81.1.1	18451
1yb5A	351	78.26	b.35.1.2,c.2.1.1	116601,116602
1ayl	541	78.46		
3bxpA	277	81.43		
2oaaA	249	84.11		
1ho8A	480	84.45	a.118.1.9	61107
2qqzA	126	88.32		
1olmA	403	88.84	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010