# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.7769		
1v47A	349	4.039	b.122.1.3,c.26.1.5	100292,100293
1dgwX	79	10.99	b.82.1.2	28091
2vr4A	846	33.68		
2rkvA	451	35.13		
2iueA	212	41.24		
1sjwA	144	43.10	d.17.4.9	98899
3tdtA	274	44.11	b.81.1.2	28053
2h7dA	101	46.06		
2h4tA	626	47.15		
1uwcA	261	48.88	c.69.1.17	100101
2dyqA	144	50.51		
1olmA	403	51.36	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2aorA	223	60.50		
1jfbA	404	61.69	a.104.1.1	66624
1umwA	237	61.72	d.223.1.2,d.223.1.2	99631,99632
2okcA	445	65.92		
2qmlA	198	66.80		
1qwiA	143	67.54	d.227.1.1	96474
1gs5A	258	67.71	c.73.1.2	70395
1cpt	412	69.02		
2oaaA	249	69.36		
1bl3A	160	75.39	c.55.3.2	33655
2oplA	187	75.61		
1iqaA	160	80.24	b.22.1.1	71274
1qg3A	195	81.22	b.1.2.1,b.1.2.1	21993,21994
1eguA	731	81.69	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
1cnvA	299	82.16	c.1.8.5	28989
1f02T	66	83.42	j.67.1.1	46360
2fsqA	243	85.08	d.61.1.4	134035
1bquA	215	88.89	b.1.2.1,b.1.2.1	22066,22067
2p0lA	288	89.59