# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	6.496		
1mgpA	313	25.65	c.119.1.1	79098
1oxwA	373	31.09	c.19.1.3	87539
1xn9A	101	40.60	d.12.1.3	115578
1dgwX	79	42.35	b.82.1.2	28091
1ywxA	102	44.65	d.12.1.3	124165
1cnvA	299	46.05	c.1.8.5	28989
2v94A	107	47.19		
3tdtA	274	52.56	b.81.1.2	28053
1e0tA	470	57.18	b.58.1.1,c.1.12.1,c.49.1.1	27064,29292,33146
1xf1A	926	63.24		
1j1uA	306	71.12	c.26.1.1	83980
1vluA	468	76.10	c.82.1.1	108864
1ho8A	480	83.80	a.118.1.9	61107
1hjxA	362	87.74	c.1.8.5,d.26.3.1	83512,83513
1jfxA	217	87.95	c.1.8.8	62943
2pnlA	203	89.50