# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u7iA 136 1.268 d.32.1.7 107724 2i7rA 118 1.542 d.32.1.2 137102 2qqzA 126 1.734 1suuA 312 3.661 b.68.10.1 99006 1ecsA 126 3.761 d.32.1.2 59407 1hh1A 143 3.765 c.52.1.18 61036 1o54A 277 4.193 c.66.1.13 92482 2fkiA 126 4.781 d.198.3.1 133657 2pjsA 119 6.306 2p7oA 133 8.519 2q48A 166 8.978 d.32.1.9 139829 2v6vA 156 12.47 1nkiA 135 12.70 d.32.1.2 91941 1bdyA 123 13.30 b.7.1.1 23190 1v47A 349 13.86 b.122.1.3,c.26.1.5 100292,100293 1xy7A 166 15.26 d.32.1.9 116215 2v17L 214 17.24 2nu8B 388 17.65 1rm4A 337 21.50 c.2.1.3,d.81.1.1 105000,105001 1xo0A 324 22.23 a.60.9.1,d.163.1.1 115674,115675 2fk9A 157 22.41 2dyqA 144 24.40 1cqkA 101 25.64 b.1.1.2 21547 1u69A 163 28.67 d.32.1.7 107699 1yrkA 126 29.50 1xrkA 124 29.84 d.32.1.2 115881 1ymmB 198 31.24 b.1.1.2,d.19.1.1 123703,123704 1xuvA 178 32.99 d.129.3.5 116069 2d4eA 515 35.19 2ouxA 286 36.36 1iakB 185 38.57 b.1.1.2,d.19.1.1 21626,38200 1noaA 113 39.29 b.1.7.1 22208 1quqB 121 41.12 b.40.4.3 25305 1bovA 69 42.98 b.40.2.1 25070 1j98A 157 43.13 d.185.1.2 62755 1whmA 92 43.71 b.34.10.1 114647 1v30A 124 43.82 d.269.1.1 113496 2pnwA 380 45.17 3comA 314 45.44 1u6lA 149 45.89 d.32.1.7 113067 2hl5C 97 48.09 2gaiA 633 48.99 1jc4A 148 49.13 d.32.1.4 62863 2fgtA 417 50.75 1k3sA 113 51.82 d.198.1.1 68120 1ttwA 138 52.49 d.198.1.1 107308 1tuc 63 52.82 2f5kA 102 53.99 b.34.13.3 132995 1i12A 160 55.28 d.108.1.1 61515 1rxzA 245 56.88 d.131.1.2,d.131.1.2 98067,98068 2j6lA 500 57.57 2pwyA 258 58.29 1gmiA 136 58.59 b.7.1.1 65309 1djrD 103 59.07 b.40.2.1 24865 2ih3B 212 59.45 2fp4B 395 60.00 c.23.4.1,d.142.1.4 133897,133898 1v9tA 166 60.05 b.62.1.1 108451 2rk0A 136 60.07 1zanL 214 60.44 2qikA 285 62.52 1tmxA 293 62.57 1mlbA 214 63.67 b.1.1.1,b.1.1.2 20050,21092 2pi2E 142 63.94 2g5dA 422 64.08 1dssG 333 64.38 c.2.1.3,d.81.1.1 30022,39937 1jk8B 190 64.77 b.1.1.2,d.19.1.1 63147,63148 1fa8A 135 65.43 d.32.1.1 38486 1my7A 114 66.31 b.1.18.1 79675 1zi0A 307 66.60 1ia9A 280 68.12 d.144.1.5 62113 2bitX 165 69.59 b.62.1.1 128590 1wguA 136 71.04 b.55.1.2 114623 1k5nB 100 72.51 b.1.1.2 77268 8fabA 212 73.79 b.1.1.1,b.1.1.2 19772,20882 1kzlA 208 75.37 b.43.4.3,b.43.4.3 77635,77636 1r9cA 139 76.95 d.32.1.2 97255 2b79A 144 77.98 1csn 298 79.27 1t4wA 196 79.58 b.2.5.2 106427 1i9gA 280 80.04 c.66.1.13 62090 2qmwA 267 80.15 2f23A 156 80.59 a.2.1.1,d.26.1.2 132797,132798 1kcvL 214 80.77 b.1.1.1,b.1.1.2 72317,72318 1opjA 293 81.28 d.144.1.7 87230 3cryA 188 82.13 1xo7A 166 82.35 b.62.1.1 115694 2pfiA 164 83.26 1pazA 123 83.52 b.6.1.1 22878 1z94A 147 83.87 d.129.3.5 124740 1gy8A 397 85.24 c.2.1.2 83376 2oseA 234 85.30 1k3tA 359 85.85 c.2.1.3,d.81.1.1 72022,72023 2bw2A 140 86.13 1itwA 741 86.76 c.77.1.2 76793 1obfO 335 88.66 c.2.1.3,d.81.1.1 86768,86769 2qcpX 80 88.76 1olzA 663 89.37 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343