# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3cdxA 354 0.9830 1ghj 79 1.057 1qjoA 80 1.729 b.84.1.1 28229 1bdoA 80 1.944 b.84.1.1 28214 1htp 131 2.656 1y8oB 128 2.725 b.84.1.1 122759 1gjxA 81 3.079 b.84.1.1 65222 1k8mA 93 3.257 b.84.1.1 68314 3crkC 87 3.448 2evbA 74 3.612 1hpcA 131 6.253 b.84.1.1 28221 1bdo 80 6.299 2qj8A 332 6.408 2d1uA 104 7.915 1zkoA 136 9.785 1rdzA 337 14.46 e.7.1.1 42882 1dcuA 357 15.34 e.7.1.1 42943 1pfzA 380 20.73 b.50.1.2 26881 1kz8A 337 22.25 e.7.1.1 77633 1nuyA 337 24.49 e.7.1.1 86213 2r6uA 148 27.32 1tdzA 272 29.86 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1vqoA 240 29.90 b.34.5.3,b.40.4.5 120361,120362 2j58A 359 30.79 2ra9A 150 32.91 1spiA 358 36.72 e.7.1.1 42939 1mdlA 359 40.27 c.1.11.2,d.54.1.1 29247,38891 1jj2A 239 40.71 b.34.5.3,b.40.4.5 63084,63085 2au3A 407 40.75 1e8nA 710 41.75 b.69.7.1,c.69.1.4 27675,34643 1rvkA 382 41.91 c.1.11.2,d.54.1.1 97928,97929 5fbpA 335 43.69 e.7.1.1 42873 1d3bA 75 50.29 b.38.1.1 24798 2gdqA 382 50.59 c.1.11.2,d.54.1.1 135020,135021 2p8bA 369 53.56 1ounA 127 55.83 d.17.4.2 38090 2vhfA 374 56.15 1hfuA 503 57.65 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2biwA 490 58.04 2yueA 168 58.94 2q07A 306 60.05 2oztA 332 61.10 1tkkA 366 62.44 c.1.11.2,d.54.1.1 107089,107090 1ufmA 84 66.62 a.4.5.47 107816 2hrvA 142 67.21 b.47.1.4 26429 1pjxA 314 73.05 b.68.6.1 104167 1ep3B 262 73.28 b.43.4.2,c.25.1.3 25664,31554 1h6zA 913 73.53 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1tzzA 392 76.23 c.1.11.2,d.54.1.1 112896,112897 2o3oA 254 76.75 1p0hA 318 80.71 d.108.1.1 93866 1rl2A 137 80.79 b.34.5.3,b.40.4.5 24610,25342 2dfkA 402 84.57 1oihA 301 84.84 b.82.2.5 93051 1m98A 317 86.59 a.175.1.1,d.17.4.6 78866,78867 1z92B 219 89.82 g.18.1.1,g.18.1.1 124738,124739