# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.5674		
3cdxA	354	0.5921		
1htp	131	0.9647		
1bdoA	80	1.385	b.84.1.1	28214
1y8oB	128	1.501	b.84.1.1	122759
3crkC	87	1.674		
1qjoA	80	1.887	b.84.1.1	28229
1gjxA	81	2.200	b.84.1.1	65222
1hpcA	131	2.597	b.84.1.1	28221
1k8mA	93	3.395	b.84.1.1	68314
2evbA	74	3.666		
1bdo	80	4.211		
2j58A	359	4.988		
1zkoA	136	5.496		
2qj8A	332	6.803		
2d1uA	104	10.04		
1z92B	219	13.06	g.18.1.1,g.18.1.1	124738,124739
2yueA	168	21.13		
1ounA	127	32.07	d.17.4.2	38090
2o3oA	254	32.82		
1vqoA	240	33.44	b.34.5.3,b.40.4.5	120361,120362
1jer	138	33.69		
1h6yA	170	34.46	b.18.1.7	70904
1at0	145	38.70		
1t5eA	360	43.15	f.46.1.1	106436
1kwnA	207	45.72	b.25.1.1	77568
1ufmA	84	47.79	a.4.5.47	107816
1kz8A	337	49.44	e.7.1.1	77633
2r78A	117	50.19		
1spiA	358	50.44	e.7.1.1	42939
2r6uA	148	51.91		
1dcuA	357	52.63	e.7.1.1	42943
1thv	207	53.75		
1tdzA	272	53.77	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1e8nA	710	55.15	b.69.7.1,c.69.1.4	27675,34643
1pfzA	380	56.14	b.50.1.2	26881
1jj2A	239	57.50	b.34.5.3,b.40.4.5	63084,63085
1rdzA	337	57.91	e.7.1.1	42882
1nuyA	337	58.32	e.7.1.1	86213
2dk7A	73	59.99		
1p22A	435	60.69	a.158.1.1,b.69.4.1	87715,87716
1dyoA	160	60.71	b.18.1.7	23771
1pmi	440	61.64		
1d3bA	75	62.59	b.38.1.1	24798
1xsjA	778	65.32	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1ep3B	262	65.60	b.43.4.2,c.25.1.3	25664,31554
1pm3A	78	66.26	b.41.1.2	94889
1gy6A	127	66.70	d.17.4.2	70736
1h6zA	913	66.79	c.1.12.2,c.8.1.1,d.142.1.5	70906,70907,70908
1h6rA	236	67.67	d.22.1.1	65683
1jb2A	127	67.77	d.17.4.2	71624
1vf7A	369	69.27	f.46.1.1	108557
1askA	127	69.96	d.17.4.2	38094
2ra9A	150	71.72		
2zbvA	263	76.15		
2yyoA	171	77.38		
2e63A	170	78.64		
1lplA	95	81.24	b.34.10.1	74173
1rqwA	207	81.64	b.25.1.1	97781
1gmuA	143	81.69	b.107.1.1,d.58.38.1	65335,65336
2au3A	407	83.68		
1ar0A	127	85.72	d.17.4.2	38092
1hfuA	503	87.84	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829