# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.6261		
3cdxA	354	1.164		
1qjoA	80	1.246	b.84.1.1	28229
1y8oB	128	1.475	b.84.1.1	122759
1gjxA	81	1.509	b.84.1.1	65222
1bdoA	80	1.928	b.84.1.1	28214
2qj8A	332	2.858		
3crkC	87	3.379		
1k8mA	93	3.486	b.84.1.1	68314
2evbA	74	4.681		
1pfzA	380	6.982	b.50.1.2	26881
1htp	131	7.560		
1bdo	80	10.50		
2d1uA	104	16.30		
1hpcA	131	35.94	b.84.1.1	28221
2j58A	359	36.02		
1zkoA	136	36.53		
2vchA	480	37.89		
1iukA	140	38.04	c.2.1.8	83712
2yueA	168	57.89		
1vpdA	299	58.93	a.100.1.1,c.2.1.6	113951,113952
2phnA	254	68.59	d.340.1.1	139696
2r6uA	148	76.25		
1at0	145	82.74		
1g1tA	157	87.31	d.169.1.1,g.3.11.1	65104,65105