# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qjoA	80	0.8106	b.84.1.1	28229
1ghj	79	0.8645		
3cdxA	354	1.140		
1k8mA	93	1.403	b.84.1.1	68314
1htp	131	1.634		
1bdoA	80	1.790	b.84.1.1	28214
1y8oB	128	3.142	b.84.1.1	122759
1gjxA	81	3.150	b.84.1.1	65222
1hpcA	131	4.338	b.84.1.1	28221
2d1uA	104	4.476		
2evbA	74	4.752		
3crkC	87	5.024		
1bdo	80	7.731		
1zkoA	136	8.721		
2qj8A	332	8.945		
1pfzA	380	15.90	b.50.1.2	26881
2yueA	168	23.33		
2hrvA	142	25.26	b.47.1.4	26429
2ra9A	150	27.25		
2j58A	359	33.02		
2r6uA	148	36.28		
1vpdA	299	42.90	a.100.1.1,c.2.1.6	113951,113952
1kz8A	337	44.67	e.7.1.1	77633
1dcuA	357	47.92	e.7.1.1	42943
2r78A	117	48.83		
1tdzA	272	49.96	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1vqoA	240	51.22	b.34.5.3,b.40.4.5	120361,120362
1nuyA	337	52.63	e.7.1.1	86213
1ounA	127	53.45	d.17.4.2	38090
1rdzA	337	53.70	e.7.1.1	42882
2o3oA	254	56.05		
1oihA	301	62.12	b.82.2.5	93051
1h6rA	236	62.33	d.22.1.1	65683
1ufmA	84	65.92	a.4.5.47	107816
2au3A	407	68.75		
2vhfA	374	71.48		
2q07A	306	78.35		
2yyoA	171	78.51		
1rvkA	382	78.83	c.1.11.2,d.54.1.1	97928,97929
1at0	145	82.10		
1d3bA	75	82.28	b.38.1.1	24798
1e8nA	710	86.25	b.69.7.1,c.69.1.4	27675,34643
1e0lA	37	87.65	b.72.1.1	27804
2e63A	170	87.80		
1pdqA	72	87.81	b.34.13.2	94590