# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.7959		
1qjoA	80	1.790	b.84.1.1	28229
1htp	131	2.089		
3cdxA	354	2.319		
1k8mA	93	2.713	b.84.1.1	68314
1bdoA	80	2.864	b.84.1.1	28214
1gjxA	81	4.179	b.84.1.1	65222
1y8oB	128	4.232	b.84.1.1	122759
3crkC	87	4.659		
2d1uA	104	7.066		
1hpcA	131	7.066	b.84.1.1	28221
2evbA	74	7.288		
1bdo	80	10.99		
2j58A	359	11.75		
2qj8A	332	12.72		
1zkoA	136	14.33		
1pfzA	380	16.32	b.50.1.2	26881
2yyoA	171	43.81		
1z92B	219	47.78	g.18.1.1,g.18.1.1	124738,124739
2yueA	168	50.47		
1cseI	71	52.96	d.40.1.1	38559
1ounA	127	53.81	d.17.4.2	38090
1vpdA	299	56.20	a.100.1.1,c.2.1.6	113951,113952
2ra9A	150	57.90		
2au3A	407	66.59		
1h6yA	170	71.24	b.18.1.7	70904
1rdzA	337	72.04	e.7.1.1	42882
1h6zA	913	72.97	c.1.12.2,c.8.1.1,d.142.1.5	70906,70907,70908
1dcuA	357	74.95	e.7.1.1	42943
1oihA	301	76.17	b.82.2.5	93051
1tdzA	272	79.59	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1k3bA	119	82.15	b.61.5.1	72016
2nwaA	88	83.15		
1wpgA	994	84.36	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1gy6A	127	84.51	d.17.4.2	70736
2r6uA	148	86.28		
1m98A	317	86.32	a.175.1.1,d.17.4.6	78866,78867
1jb2A	127	87.44	d.17.4.2	71624