# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.1988		
3crkC	87	0.4367		
1y8oB	128	0.8163	b.84.1.1	122759
3cdxA	354	4.340		
1bdo	80	4.737		
1bdoA	80	5.376	b.84.1.1	28214
1hpcA	131	6.567	b.84.1.1	28221
1pmi	440	7.344		
1zkoA	136	10.30		
1kkhA	317	14.85	d.14.1.5,d.58.26.3	72645,72646
2qj8A	332	16.31		
2gdqA	382	18.09	c.1.11.2,d.54.1.1	135020,135021
2q4zA	312	19.22		
2j58A	359	24.31		
1b24A	188	26.15	d.95.2.1,d.95.2.1	40573,40574
2o07A	304	27.17	c.66.1.17	138862
1mdlA	359	27.31	c.1.11.2,d.54.1.1	29247,38891
1am2A	199	27.87	b.86.1.2	28381
1tdzA	272	28.61	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1q25A	432	29.32	b.64.1.1,b.64.1.1,b.64.1.1	104493,104494,104495
2gu2A	312	29.55		
3cxjA	165	30.94		
2oktA	342	34.56		
2i9wA	184	35.57		
2vduB	450	35.87		
2g6yA	217	36.86		
1tc1A	220	37.51	c.61.1.1	34083
2oziA	98	37.61		
1mdl	359	38.85		
1dqpA	230	40.24	c.61.1.1	34069
1wueA	386	43.34	c.1.11.2,d.54.1.1	114892,114893
1d3bA	75	44.71	b.38.1.1	24798
3boxA	415	45.73		
1vf7A	369	46.56	f.46.1.1	108557
2qf7A	1165	47.82		
1w66A	232	49.53	d.104.1.3	120652
1vqoA	240	51.04	b.34.5.3,b.40.4.5	120361,120362
2z0bA	131	55.10		
1nrfA	262	55.31	e.3.1.1	92086
2gshA	414	56.49		
1vbgA	876	57.67	c.1.12.2,c.8.1.1,d.142.1.5	119951,119952,119953
1h6zA	913	58.41	c.1.12.2,c.8.1.1,d.142.1.5	70906,70907,70908
2r44A	331	60.62		
2ra9A	150	62.32		
2p8bA	369	63.84		
1dd9A	338	63.87	e.13.1.1	43254
1k6zA	141	64.89	d.198.1.1	68247
1brwA	433	67.25	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1f9zA	135	67.30	d.32.1.1	38484
2j97A	109	72.25		
2oz8A	389	75.11		
2i7cA	283	76.06		
1gprA	162	76.54	b.84.3.1	28267
1qftA	175	77.18	b.60.1.1	27151
1gpr	162	77.72		
1fa8A	135	77.96	d.32.1.1	38486
1o7nA	449	78.24	b.33.1.2,d.129.3.3	81162,81163
2gbwA	454	81.70		
2zadA	345	82.18		
2r37A	207	82.42		
2ckfA	454	83.19		
2d59A	144	83.95	c.2.1.8	131266
1ayoA	130	84.64	b.2.4.1	22431
1uliA	460	85.14	b.33.1.2,d.129.3.3	107921,107922
1gy6A	127	85.65	d.17.4.2	70736
2ovlA	371	85.88		
2qk0A	74	85.98		
2coiA	386	86.32		
2dfkA	402	86.35		
1kblA	873	86.67	c.1.12.2,c.8.1.1,d.142.1.5	68384,68385,68386
2e63A	170	87.77		
2bvfA	459	87.99		
1musA	477	89.08	c.55.3.4	79494