# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.3229		
3crkC	87	0.6913		
1y8oB	128	1.418	b.84.1.1	122759
1bdo	80	6.436		
1pmi	440	6.989		
1hpcA	131	7.842	b.84.1.1	28221
1bdoA	80	8.005	b.84.1.1	28214
2j58A	359	9.497		
2oziA	98	10.26		
1zkoA	136	16.82		
3cdxA	354	18.42		
2q4zA	312	20.82		
1b24A	188	24.31	d.95.2.1,d.95.2.1	40573,40574
2gu2A	312	26.89		
1tdzA	272	28.91	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1am2A	199	30.65	b.86.1.2	28381
2i9wA	184	32.12		
1kkhA	317	32.25	d.14.1.5,d.58.26.3	72645,72646
1dqpA	230	32.63	c.61.1.1	34069
2vduB	450	35.03		
3cxjA	165	36.77		
2qj8A	332	37.14		
1tc1A	220	38.24	c.61.1.1	34083
2g6yA	217	41.68		
2d59A	144	43.26	c.2.1.8	131266
3boxA	415	46.49		
1fgyA	127	47.77	b.55.1.1	26976
2qq9A	226	53.72		
2qf7A	1165	54.34		
1q25A	432	55.30	b.64.1.1,b.64.1.1,b.64.1.1	104493,104494,104495
2htdA	140	62.83		
2o07A	304	70.20	c.66.1.17	138862
1w66A	232	72.23	d.104.1.3	120652
1m98A	317	77.34	a.175.1.1,d.17.4.6	78866,78867
2qhkA	174	81.41		
1musA	477	84.97	c.55.3.4	79494
1d3bA	75	87.33	b.38.1.1	24798
1f9zA	135	87.48	d.32.1.1	38484
2dfkA	402	87.52		
1vf7A	369	88.33	f.46.1.1	108557
2r37A	207	88.74