# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.2956		
3crkC	87	0.7264		
1y8oB	128	1.383	b.84.1.1	122759
1pmi	440	6.540		
1bdo	80	7.461		
1hpcA	131	8.335	b.84.1.1	28221
2oziA	98	9.148		
1bdoA	80	9.246	b.84.1.1	28214
2j58A	359	10.90		
1zkoA	136	15.07		
2gu2A	312	17.92		
3cdxA	354	22.20		
1b24A	188	25.70	d.95.2.1,d.95.2.1	40573,40574
2q4zA	312	26.73		
2i9wA	184	33.24		
2qq9A	226	34.71		
2vduB	450	35.03		
1am2A	199	35.16	b.86.1.2	28381
2g6yA	217	35.40		
2d59A	144	35.72	c.2.1.8	131266
3cxjA	165	39.99		
1kkhA	317	41.32	d.14.1.5,d.58.26.3	72645,72646
1dqpA	230	42.67	c.61.1.1	34069
2htdA	140	42.88		
1tdzA	272	49.32	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1tc1A	220	49.33	c.61.1.1	34083
2qj8A	332	49.79		
1q25A	432	53.83	b.64.1.1,b.64.1.1,b.64.1.1	104493,104494,104495
1fgyA	127	57.98	b.55.1.1	26976
3boxA	415	62.30		
2qf7A	1165	66.65		
1w66A	232	69.24	d.104.1.3	120652
1vf7A	369	75.10	f.46.1.1	108557
1nuiA	255	78.97	e.13.1.2,g.41.3.2	86194,86195
2r37A	207	79.93		
2eixA	243	86.54		
2qhkA	174	86.81		
2h7wA	131	87.11	b.1.26.1	136225
1nrfA	262	87.21	e.3.1.1	92086
1musA	477	89.60	c.55.3.4	79494