# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.1535		
3crkC	87	0.6814		
1y8oB	128	0.7007	b.84.1.1	122759
3cdxA	354	7.101		
2qj8A	332	8.639		
1bdoA	80	9.305	b.84.1.1	28214
1zkoA	136	9.832		
1bdo	80	10.06		
2d59A	144	11.79	c.2.1.8	131266
2q4zA	312	12.63		
1pmi	440	16.97		
2dfkA	402	20.82		
1am2A	199	21.58	b.86.1.2	28381
1hpcA	131	22.49	b.84.1.1	28221
1w66A	232	26.76	d.104.1.3	120652
2vchA	480	27.85		
2j58A	359	31.48		
1ofzA	312	31.60	b.68.8.1	86978
2axpA	173	33.46	c.37.1.1	127497
1kkhA	317	38.09	d.14.1.5,d.58.26.3	72645,72646
1tc1A	220	38.67	c.61.1.1	34083
1b24A	188	40.34	d.95.2.1,d.95.2.1	40573,40574
2b4uA	335	44.54		
2dc0A	434	45.61		
1vf7A	369	48.41	f.46.1.1	108557
1cbyA	259	51.34	d.103.1.1	40705
2anrA	178	52.57		
1v7pB	128	58.72	d.169.1.1	108407
2h7wA	131	59.11	b.1.26.1	136225
2coiA	386	61.98		
1ouoA	210	63.34	d.4.1.6	93554
1j0sA	157	63.43	b.42.1.2	90747
1wpnA	188	68.73	c.107.1.1	114826
3b2tA	311	68.97		
2bcoA	350	70.25	c.56.5.7	128302
1pixA	587	72.03	c.14.1.4,c.14.1.4	118578,118579
3bdwA	123	74.34		
1nrfA	262	79.32	e.3.1.1	92086
2e63A	170	80.67		
2gdtA	116	81.78		
2jw5A	106	81.83		
2oziA	98	84.05		
2df8A	325	85.78		
1zjrA	211	85.78		
2ogeA	399	85.90		
2uwxA	494	89.63	e.3.1.1	140002