# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.2614		
3crkC	87	0.5528		
1y8oB	128	1.653	b.84.1.1	122759
1hpcA	131	4.456	b.84.1.1	28221
1pmi	440	4.648		
1zkoA	136	7.113		
1bdo	80	8.647		
3cdxA	354	10.09		
1bdoA	80	10.77	b.84.1.1	28214
2oziA	98	11.32		
2q4zA	312	20.87		
1dqpA	230	21.73	c.61.1.1	34069
1am2A	199	22.20	b.86.1.2	28381
1kkhA	317	25.21	d.14.1.5,d.58.26.3	72645,72646
1tc1A	220	26.49	c.61.1.1	34083
2qj8A	332	26.75		
2j58A	359	27.12		
2i9wA	184	27.61		
2d59A	144	29.81	c.2.1.8	131266
2gu2A	312	29.89		
1b24A	188	31.63	d.95.2.1,d.95.2.1	40573,40574
2htdA	140	32.67		
2g6yA	217	39.72		
2vduB	450	42.52		
3cxjA	165	44.37		
2bcoA	350	45.39	c.56.5.7	128302
2qf7A	1165	47.21		
1q25A	432	47.59	b.64.1.1,b.64.1.1,b.64.1.1	104493,104494,104495
3boxA	415	51.72		
1vf7A	369	52.87	f.46.1.1	108557
2j97A	109	54.81		
2ra9A	150	57.76		
2h7wA	131	58.06	b.1.26.1	136225
2r37A	207	61.21		
2gdqA	382	61.80	c.1.11.2,d.54.1.1	135020,135021
1mdlA	359	62.18	c.1.11.2,d.54.1.1	29247,38891
1musA	477	65.68	c.55.3.4	79494
1fgyA	127	67.67	b.55.1.1	26976
2au3A	407	70.95		
2r44A	331	71.01		
2dfkA	402	74.06		
1d3bA	75	77.61	b.38.1.1	24798
2bpsA	81	77.80		
1dd9A	338	77.81	e.13.1.1	43254
2z0bA	131	79.43		
1vbgA	876	80.07	c.1.12.2,c.8.1.1,d.142.1.5	119951,119952,119953
1gy6A	127	81.50	d.17.4.2	70736
2o07A	304	82.67	c.66.1.17	138862
1h6zA	913	83.71	c.1.12.2,c.8.1.1,d.142.1.5	70906,70907,70908
2efjA	384	84.11		
1tdzA	272	84.26	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
2oktA	342	86.06