# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.3748		
3crkC	87	0.6582		
1y8oB	128	1.262	b.84.1.1	122759
1hpcA	131	5.740	b.84.1.1	28221
1pmi	440	12.14		
1bdo	80	12.51		
1bdoA	80	15.41	b.84.1.1	28214
1zkoA	136	17.41		
1kkhA	317	20.50	d.14.1.5,d.58.26.3	72645,72646
2gu2A	312	20.51		
2j58A	359	21.50		
2oziA	98	22.42		
2q4zA	312	23.79		
2i9wA	184	23.92		
1dqpA	230	32.66	c.61.1.1	34069
1b24A	188	32.92	d.95.2.1,d.95.2.1	40573,40574
2z0bA	131	34.39		
3cxjA	165	35.08		
1tc1A	220	37.03	c.61.1.1	34083
3cdxA	354	37.29		
2vduB	450	43.03		
2g6yA	217	43.94		
1q25A	432	47.46	b.64.1.1,b.64.1.1,b.64.1.1	104493,104494,104495
2htdA	140	47.48		
1tdzA	272	47.82	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
2qq9A	226	49.38		
1vf7A	369	51.05	f.46.1.1	108557
2qf7A	1165	57.02		
1am2A	199	59.93	b.86.1.2	28381
1d3bA	75	62.05	b.38.1.1	24798
1w66A	232	67.66	d.104.1.3	120652
2gdqA	382	71.86	c.1.11.2,d.54.1.1	135020,135021
2d59A	144	77.25	c.2.1.8	131266
3cloA	258	80.13		
1nrfA	262	82.02	e.3.1.1	92086
1h6zA	913	85.27	c.1.12.2,c.8.1.1,d.142.1.5	70906,70907,70908
2o07A	304	88.71	c.66.1.17	138862
1gy6A	127	89.67	d.17.4.2	70736
1musA	477	89.81	c.55.3.4	79494
1uekA	275	89.89	d.14.1.5,d.58.26.5	88483,88484