# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1y8oB 128 0.1299 b.84.1.1 122759 3cdxA 354 0.1478 2qj8A 332 0.1922 3crkC 87 0.2582 2evbA 74 0.6261 1gxrA 337 4.541 b.69.4.1 70722 2bs2A 660 4.945 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 2bs3A 656 5.961 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1bdoA 80 6.980 b.84.1.1 28214 1bdo 80 6.992 2pbiB 354 9.364 2pg9A 337 9.565 2cw9A 194 11.36 d.17.4.13 130920 2zadA 345 12.71 1njhA 119 14.17 b.128.1.1 85787 1d7qA 143 16.52 b.40.4.5 25331 1chuA 540 17.42 a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1a0rB 340 19.46 b.69.4.1 27658 2gnqA 336 20.02 2eayA 233 21.08 2ywdA 191 21.62 2bv5A 282 22.39 1tkkA 366 22.56 c.1.11.2,d.54.1.1 107089,107090 1gotB 340 22.89 b.69.4.1 27648 3c0dA 119 23.19 1pieA 419 23.70 d.14.1.5,d.58.26.7 94706,94707 1qftA 175 24.62 b.60.1.1 27151 1dynA 125 25.21 b.55.1.1 26955 1vzoA 355 25.95 d.144.1.7 108971 1erjA 393 26.43 b.69.4.1 27660 1qpoA 284 26.47 c.1.17.1,d.41.2.1 29561,38597 2oztA 332 27.46 2hx0A 154 30.26 d.290.1.3 136830 1vmkA 277 31.36 c.56.2.1 113680 1xfcA 384 32.03 2j59M 168 32.21 2gdqA 382 36.09 c.1.11.2,d.54.1.1 135020,135021 1nexB 464 36.21 a.158.1.1,b.69.4.1 80443,80444 2b5tI 432 37.26 e.1.1.1 127905 1ti6A 875 38.67 b.52.2.2,c.81.1.1 106974,106975 1r17A 343 39.33 b.2.3.4,b.2.3.4 96796,96797 1jpcA 109 39.42 b.78.1.1 27986 2bcjB 340 40.30 b.69.4.1 128289 2gu9A 113 40.80 2pmqA 377 42.06 2h14A 317 42.67 1kj1D 109 42.68 b.78.1.1 68639 2f68X 313 43.18 2obwA 258 43.72 1quqB 121 44.42 b.40.4.3 25305 2dxuA 235 44.68 2hljA 157 45.22 d.38.1.1 136570 2g30A 258 45.47 b.1.10.1,d.105.1.1 134546,134547 1e1oA 504 47.71 b.40.4.1,d.104.1.1 25258,40714 1vqoA 240 48.05 b.34.5.3,b.40.4.5 120361,120362 1b2pA 119 48.27 b.78.1.1 27998 2pgwA 384 49.41 1wp5A 323 49.44 b.68.10.1 114780 2uzxB 727 49.95 1yliA 153 50.39 d.38.1.1 123651 2dpfA 115 50.48 2b7nA 273 50.66 2e63A 170 53.93 2eisA 133 54.54 1xezA 721 54.71 2yvpA 182 54.75 1wchA 315 55.68 c.45.1.2 114508 1rwiA 270 56.00 b.68.9.1 97987 1q3lA 69 56.56 b.34.13.2 111652 2ex2A 458 56.62 e.3.1.3 132497 1o7nA 449 61.70 b.33.1.2,d.129.3.3 81162,81163 2vktA 289 62.40 2dejA 350 62.57 3bjkA 153 63.21 1uhgA 385 64.47 e.1.1.1 88491 1zn8A 180 64.94 c.61.1.1 125376 1e42A 258 64.96 b.1.10.1,d.105.1.1 22316,40792 1ra0A 430 67.20 b.92.1.2,c.1.9.5 111756,111757 2p9wA 334 67.94 1pmnA 364 68.86 d.144.1.7 94907 2hrvA 142 69.09 b.47.1.4 26429 1k6zA 141 70.59 d.198.1.1 68247 1ep3B 262 71.00 b.43.4.2,c.25.1.3 25664,31554 1ew0A 130 71.11 d.110.3.2 40905 2hsiA 282 71.19 2qvbA 297 72.41 1zosA 230 74.84 1wueA 386 75.27 c.1.11.2,d.54.1.1 114892,114893 2f71A 298 76.43 c.45.1.2 133070 1uf3A 228 78.56 d.159.1.6 99317 2pia 321 79.52 3c0tA 207 80.50 2pceA 386 80.67 2h88A 621 80.88 2oz8A 389 81.49 2bpa1 426 84.87 2oktA 342 85.86 1zkoA 136 85.96 2ovrB 445 86.32 1ijaA 148 86.87 b.100.1.1 62484 1qh5A 260 88.99 d.157.1.2 42057