# TARGET T0397 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0397.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.87914 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 G 0.130 0.021 0.011 0.003 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.193 0.038 0.132 0.460 2 T 0.233 0.011 0.017 0.007 0.003 0.001 0.002 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.134 0.013 0.167 0.403 3 K 0.021 0.009 0.002 0.002 0.005 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.390 0.003 0.130 0.431 4 L 0.034 0.008 0.006 0.002 0.056 0.057 0.038 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.441 0.006 0.097 0.231 5 I 0.007 0.004 0.001 0.001 0.004 0.015 0.015 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.870 0.002 0.026 0.043 6 S 0.021 0.011 0.002 0.001 0.005 0.003 0.020 0.010 0.001 0.001 0.001 0.001 0.002 0.009 0.028 0.011 0.254 0.006 0.042 0.572 7 V 0.005 0.003 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.004 0.002 0.043 0.019 0.006 0.009 0.811 0.001 0.019 0.069 8 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 9 A 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.010 0.003 0.002 0.002 0.001 0.001 0.001 0.580 0.001 0.081 0.297 10 E 0.038 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.238 0.004 0.166 0.514 11 G 0.149 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.123 0.020 0.091 0.591 12 Y 0.213 0.012 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.216 0.020 0.078 0.432 13 K 0.033 0.013 0.009 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.416 0.003 0.107 0.410 14 V 0.023 0.013 0.012 0.005 0.047 0.019 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.317 0.008 0.079 0.462 15 Y 0.014 0.016 0.005 0.002 0.012 0.015 0.018 0.008 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.006 0.567 0.005 0.058 0.264 16 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.994 17 I 0.023 0.009 0.002 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.004 0.002 0.036 0.030 0.012 0.007 0.572 0.005 0.075 0.215 18 M 0.044 0.035 0.002 0.001 0.001 0.001 0.001 0.001 0.009 0.006 0.005 0.002 0.010 0.004 0.002 0.002 0.506 0.004 0.079 0.287 19 D 0.037 0.050 0.002 0.001 0.001 0.001 0.001 0.001 0.050 0.014 0.004 0.002 0.001 0.001 0.001 0.001 0.452 0.008 0.062 0.313 20 F 0.031 0.041 0.007 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.400 0.016 0.080 0.407 21 G 0.038 0.045 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.222 0.035 0.213 0.426 22 F 0.138 0.018 0.067 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.002 0.141 0.048 0.187 0.382 23 R 0.061 0.065 0.028 0.007 0.008 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.037 0.028 0.009 0.006 0.177 0.011 0.101 0.456 24 V 0.030 0.068 0.008 0.005 0.050 0.006 0.002 0.002 0.002 0.009 0.004 0.002 0.013 0.007 0.004 0.003 0.286 0.005 0.084 0.410 25 L 0.022 0.091 0.006 0.002 0.011 0.014 0.003 0.003 0.079 0.028 0.012 0.006 0.005 0.003 0.002 0.004 0.302 0.010 0.124 0.273 26 K 0.025 0.074 0.003 0.001 0.001 0.001 0.002 0.001 0.033 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.242 0.011 0.091 0.507 27 G 0.055 0.029 0.005 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.154 0.029 0.104 0.618 28 Y 0.268 0.013 0.052 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.073 0.036 0.094 0.461 29 R 0.031 0.028 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.315 0.004 0.132 0.477 30 L 0.034 0.069 0.024 0.003 0.077 0.011 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.420 0.013 0.093 0.245 31 A 0.032 0.103 0.005 0.002 0.025 0.025 0.009 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.629 0.008 0.036 0.111 32 T 0.041 0.169 0.006 0.002 0.005 0.003 0.013 0.008 0.001 0.001 0.001 0.001 0.005 0.036 0.045 0.009 0.263 0.012 0.064 0.317 33 L 0.022 0.071 0.003 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.004 0.004 0.184 0.240 0.051 0.011 0.334 0.007 0.014 0.047 34 E 0.024 0.117 0.003 0.001 0.001 0.001 0.001 0.001 0.004 0.019 0.073 0.003 0.068 0.010 0.004 0.003 0.340 0.012 0.063 0.252 35 S 0.020 0.040 0.005 0.001 0.001 0.001 0.001 0.001 0.169 0.357 0.018 0.005 0.002 0.001 0.001 0.001 0.186 0.016 0.030 0.149 36 K 0.013 0.037 0.003 0.001 0.001 0.001 0.001 0.001 0.192 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.150 0.006 0.159 0.432 37 K 0.025 0.022 0.007 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.094 0.058 0.356 0.433 38 G 0.297 0.008 0.060 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.096 0.181 0.073 0.275 39 D 0.071 0.007 0.038 0.012 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.316 0.005 0.344 0.199 40 L 0.004 0.003 0.003 0.003 0.171 0.013 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.314 0.001 0.044 0.434 41 R 0.001 0.001 0.001 0.001 0.095 0.190 0.035 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.616 0.001 0.013 0.031 42 Y 0.005 0.005 0.002 0.001 0.005 0.008 0.042 0.017 0.002 0.001 0.001 0.002 0.002 0.008 0.018 0.013 0.290 0.004 0.059 0.514 43 V 0.002 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.010 0.018 0.017 0.010 0.875 0.001 0.018 0.037 44 N 0.004 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.013 0.004 0.025 0.032 0.025 0.008 0.233 0.004 0.063 0.577 45 S 0.021 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.021 0.076 0.005 0.041 0.010 0.006 0.007 0.336 0.006 0.081 0.365 46 P 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.001 0.032 0.935 47 V 0.014 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.076 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.108 0.004 0.335 0.452 48 S 0.050 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.117 0.011 0.132 0.679 49 G 0.174 0.005 0.006 0.003 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.318 0.022 0.127 0.336 50 T 0.081 0.002 0.006 0.004 0.016 0.005 0.005 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.601 0.004 0.110 0.158 51 V 0.001 0.001 0.001 0.001 0.016 0.009 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.880 0.001 0.017 0.065 52 I 0.001 0.001 0.001 0.001 0.030 0.047 0.040 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.828 0.001 0.010 0.028 53 F 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.916 0.001 0.012 0.053 54 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.004 0.929 0.001 0.014 0.043 55 N 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.010 0.022 0.005 0.762 0.001 0.049 0.138 56 E 0.048 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.005 0.002 0.005 0.011 0.031 0.005 0.256 0.011 0.089 0.529 57 I 0.036 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.006 0.007 0.014 0.004 0.015 0.011 0.007 0.004 0.377 0.004 0.171 0.334 58 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.993 59 S 0.026 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.007 0.008 0.001 0.004 0.002 0.001 0.001 0.089 0.007 0.055 0.788 60 E 0.170 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.027 0.017 0.082 0.671 61 R 0.324 0.015 0.003 0.001 0.001 0.001 0.001 0.001 0.015 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.030 0.237 0.349 62 A 0.061 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.003 0.037 0.875 63 N 0.059 0.013 0.004 0.002 0.004 0.006 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.275 0.007 0.194 0.427 64 Y 0.179 0.006 0.009 0.006 0.015 0.024 0.015 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.322 0.012 0.104 0.295 65 V 0.008 0.003 0.001 0.001 0.002 0.002 0.015 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.809 0.001 0.041 0.111 66 F 0.002 0.002 0.001 0.001 0.008 0.005 0.011 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.825 0.001 0.027 0.108 67 Y 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.002 0.003 0.005 0.003 0.938 0.001 0.012 0.026 68 M 0.002 0.003 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.005 0.007 0.013 0.007 0.807 0.001 0.026 0.121 69 L 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.004 0.002 0.005 0.004 0.004 0.004 0.855 0.001 0.029 0.083 70 E 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.004 0.001 0.002 0.002 0.003 0.002 0.153 0.001 0.083 0.738 71 E 0.019 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.126 0.004 0.144 0.693