# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.1310		
2awkA	228	0.4434		
1zkoA	136	0.4636		
2q4zA	312	0.7686		
1y8oB	128	0.8189	b.84.1.1	122759
1ghj	79	0.9157		
1hpcA	131	0.9271	b.84.1.1	28221
3crkC	87	0.9367		
1htp	131	1.007		
1bdo	80	1.291		
2au3A	407	2.312		
1k8mA	93	2.439	b.84.1.1	68314
2bcoA	350	2.516	c.56.5.7	128302
2qj8A	332	2.565		
1bdoA	80	4.829	b.84.1.1	28214
3cdxA	354	5.510		
1t3lA	337	12.97	b.34.2.1,c.37.1.1	106358,106359
2r44A	331	14.21		
2qf7A	1165	18.72		
1whmA	92	18.73	b.34.10.1	114647
1t5eA	360	19.47	f.46.1.1	106436
1ec7A	446	21.12	c.1.11.2,d.54.1.1	29218,38862
2bpsA	81	23.49		
2oktA	342	24.77		
2oziA	98	26.19		
1or0B	528	29.20		
1clc	639	29.42		
3cxjA	165	35.74		
1yw4A	341	35.83	c.56.5.7	124131
2pz4A	239	36.01		
2oplA	187	36.22		
3cla	213	37.29		
1kb5B	117	37.75	b.1.1.1	20632
2aynA	404	38.15	d.3.1.9	127563
1pmiA	440	39.89	b.82.1.3	28114
1fm2B	520	41.73		
2a1hA	365	42.18	e.17.1.1	125997
1wpgA	994	44.12	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1w66A	232	45.05	d.104.1.3	120652
1xbbA	291	45.13	d.144.1.7	115077
1gpr	162	46.41		
1ekfA	365	46.60	e.17.1.1	59445
1dd9A	338	47.65	e.13.1.1	43254
1gy6A	127	50.74	d.17.4.2	70736
1a02N	301	51.71	b.1.18.1,b.2.5.3	21923,22440
2j58A	359	52.96		
2yueA	168	52.97		
1qhlA	227	55.34	c.37.1.12	32382
1x31B	404	59.86		
2icrA	237	62.36		
2r6uA	148	62.77		
1i0rA	169	62.79	b.45.1.2	61489
1gcyA	527	62.92	b.71.1.1,c.1.8.1	27788,28775
2ofzA	138	63.08		
1tkkA	366	64.39	c.1.11.2,d.54.1.1	107089,107090
2qa1A	500	65.51		
1upqA	123	65.63	b.55.1.1	113392
1gybA	125	66.63	d.17.4.2	70744
1ofzA	312	66.79	b.68.8.1	86978
1gprA	162	67.01	b.84.3.1	28267
1vlaA	150	67.68	d.227.1.2	108735
1clcA	639	69.72	a.102.1.2,b.1.18.2	18835,21872
2o07A	304	70.64	c.66.1.17	138862
2afbA	351	73.39	c.72.1.1	126674
2o3oA	254	74.73		
2abwA	227	75.62	c.23.16.1	126535
1vf7A	369	75.64	f.46.1.1	108557
1oygA	447	80.23	b.67.2.2	93726
1uirA	314	82.09	c.66.1.17	99429
2p1gA	249	85.65		
1p7hL	286	89.09	b.1.18.1,b.2.5.3	94271,94272