# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.2289		
1zkoA	136	0.6118		
1y8oB	128	0.9452	b.84.1.1	122759
1ghj	79	1.016		
2awkA	228	1.043		
3crkC	87	1.149		
1bdo	80	1.443		
2qj8A	332	1.983		
1htp	131	2.191		
1hpcA	131	2.273	b.84.1.1	28221
2q4zA	312	2.699		
2bcoA	350	2.763	c.56.5.7	128302
1k8mA	93	3.543	b.84.1.1	68314
2au3A	407	3.921		
1bdoA	80	4.336	b.84.1.1	28214
3cdxA	354	4.607		
2r44A	331	11.94		
1t3lA	337	21.58	b.34.2.1,c.37.1.1	106358,106359
2j58A	359	26.77		
2oktA	342	29.03		
2bpsA	81	30.04		
2qf7A	1165	30.15		
1t5eA	360	31.24	f.46.1.1	106436
1ec7A	446	35.86	c.1.11.2,d.54.1.1	29218,38862
1pmiA	440	37.03	b.82.1.3	28114
1ekfA	365	37.72	e.17.1.1	59445
2aynA	404	39.86	d.3.1.9	127563
3cla	213	40.67		
2a1hA	365	41.56	e.17.1.1	125997
3cxjA	165	41.73		
3cx5A	431	41.97		
1kb5B	117	42.62	b.1.1.1	20632
1whmA	92	43.31	b.34.10.1	114647
1clc	639	43.38		
1or0B	528	46.17		
2o3oA	254	47.33		
2pz4A	239	48.25		
1gpr	162	48.70		
2oplA	187	49.22		
2r6uA	148	49.84		
1w66A	232	51.38	d.104.1.3	120652
1i0rA	169	52.76	b.45.1.2	61489
1a02N	301	53.49	b.1.18.1,b.2.5.3	21923,22440
2qa1A	500	54.87		
1x31B	404	55.48		
1p7hL	286	55.59	b.1.18.1,b.2.5.3	94271,94272
1ofzA	312	56.17	b.68.8.1	86978
2d1uA	104	60.90		
2j97A	109	62.77		
1tkkA	366	64.28	c.1.11.2,d.54.1.1	107089,107090
1fm2B	520	68.44		
2ofzA	138	69.51		
2abwA	227	70.09	c.23.16.1	126535
1gy6A	127	70.68	d.17.4.2	70736
2cmgA	262	72.12		
1yw4A	341	72.66	c.56.5.7	124131
1dd9A	338	73.21	e.13.1.1	43254
2g6yA	217	78.03		
1wpgA	994	79.18	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2o07A	304	79.94	c.66.1.17	138862
1xbbA	291	81.81	d.144.1.7	115077
2r37A	207	82.89		
1gybA	125	83.89	d.17.4.2	70744
2dk8A	81	83.98		
2coiA	386	89.14