# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.2537		
2awkA	228	0.4971		
2q4zA	312	0.5027		
1zkoA	136	0.7506		
1y8oB	128	1.161	b.84.1.1	122759
1ghj	79	1.399		
1hpcA	131	1.458	b.84.1.1	28221
1htp	131	1.461		
1bdo	80	1.512		
3crkC	87	1.561		
1k8mA	93	3.033	b.84.1.1	68314
2qj8A	332	4.778		
1bdoA	80	4.954	b.84.1.1	28214
2au3A	407	5.356		
2bcoA	350	6.368	c.56.5.7	128302
3cdxA	354	12.48		
1w66A	232	17.10	d.104.1.3	120652
2bpsA	81	25.23		
2r44A	331	25.72		
1t3lA	337	26.17	b.34.2.1,c.37.1.1	106358,106359
1pmiA	440	27.93	b.82.1.3	28114
2qa1A	500	28.86		
2oziA	98	29.41		
1xbbA	291	34.16	d.144.1.7	115077
2a1hA	365	41.07	e.17.1.1	125997
1whmA	92	41.16	b.34.10.1	114647
1yw4A	341	41.91	c.56.5.7	124131
2o3oA	254	41.95		
2j58A	359	43.67		
1ekfA	365	45.31	e.17.1.1	59445
2oplA	187	45.31		
1t5eA	360	48.65	f.46.1.1	106436
2pz4A	239	53.19		
1upqA	123	55.73	b.55.1.1	113392
3cxjA	165	58.21		
2oktA	342	58.37		
1clc	639	60.29		
1x31B	404	60.93		
1gpr	162	63.39		
2r6uA	148	66.74		
2qf7A	1165	66.76		
2yueA	168	67.41		
1qhlA	227	67.56	c.37.1.12	32382
1oygA	447	68.57	b.67.2.2	93726
1or0B	528	70.87		
1ec7A	446	72.25	c.1.11.2,d.54.1.1	29218,38862
3cx5A	431	72.34		
1gcyA	527	75.75	b.71.1.1,c.1.8.1	27788,28775
1ofzA	312	76.15	b.68.8.1	86978
1ci9A	392	76.36	e.3.1.1	64767
3cla	213	77.39		
1v9wA	130	78.58	c.47.1.16	108453
1rl2A	137	80.40	b.34.5.3,b.40.4.5	24610,25342
1wpgA	994	80.82	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1kb5B	117	82.82	b.1.1.1	20632
2ofzA	138	83.96		
1tdzA	272	84.18	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
3c0dA	119	86.72		
2j97A	109	87.30		
2g6yA	217	87.74		
1ss4A	153	88.18	d.32.1.6	105976
1w5rA	278	88.24	d.3.1.5	120643
2cf8H	257	88.34