# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.1809		
2q4zA	312	0.2708		
2awkA	228	0.5138		
1zkoA	136	0.7132		
1y8oB	128	1.049	b.84.1.1	122759
1ghj	79	1.256		
1bdo	80	1.266		
1htp	131	1.272		
3crkC	87	1.336		
1hpcA	131	1.648	b.84.1.1	28221
2qj8A	332	2.310		
2bcoA	350	2.898	c.56.5.7	128302
1k8mA	93	3.700	b.84.1.1	68314
2au3A	407	4.013		
1bdoA	80	4.548	b.84.1.1	28214
3cdxA	354	9.925		
1t3lA	337	22.46	b.34.2.1,c.37.1.1	106358,106359
1pmiA	440	22.65	b.82.1.3	28114
1whmA	92	22.86	b.34.10.1	114647
2bpsA	81	23.04		
1yw4A	341	28.91	c.56.5.7	124131
2oziA	98	30.50		
1w66A	232	30.87	d.104.1.3	120652
1xbbA	291	30.91	d.144.1.7	115077
2r44A	331	36.30		
2qf7A	1165	42.74		
1qhlA	227	43.66	c.37.1.12	32382
2o3oA	254	44.67		
2oplA	187	46.12		
1t5eA	360	48.41	f.46.1.1	106436
1or0B	528	48.92		
1gcyA	527	49.39	b.71.1.1,c.1.8.1	27788,28775
2pz4A	239	51.71		
2oktA	342	55.58		
1upqA	123	56.58	b.55.1.1	113392
1i0rA	169	56.59	b.45.1.2	61489
3cla	213	57.83		
1clc	639	59.57		
1ec7A	446	60.27	c.1.11.2,d.54.1.1	29218,38862
1x31B	404	63.83		
2ofzA	138	67.02		
2j58A	359	71.42		
2a1hA	365	79.07	e.17.1.1	125997
3cx5A	431	81.75		
1fm2B	520	82.47		
1ekfA	365	83.42	e.17.1.1	59445
1gy6A	127	83.93	d.17.4.2	70736
2g6yA	217	84.31		
2qa1A	500	84.43		
1dd9A	338	84.69	e.13.1.1	43254
1wpgA	994	87.83	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
3cxjA	165	87.85