# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.1853		
1y8oB	128	0.6198	b.84.1.1	122759
1ghj	79	0.8056		
2qj8A	332	1.138		
1bdo	80	1.778		
3crkC	87	1.943		
2awkA	228	2.084		
2bcoA	350	2.235	c.56.5.7	128302
1zkoA	136	2.541		
1k8mA	93	5.380	b.84.1.1	68314
3cdxA	354	5.474		
1bdoA	80	6.365	b.84.1.1	28214
1w66A	232	8.074	d.104.1.3	120652
1xbbA	291	8.398	d.144.1.7	115077
2q4zA	312	9.179		
1htp	131	10.31		
1whmA	92	10.53	b.34.10.1	114647
1hpcA	131	14.70	b.84.1.1	28221
2dc0A	434	19.65		
1zs7A	190	20.21	b.122.1.1,d.17.6.4	125593,125594
1x31B	404	27.23		
2d59A	144	28.13	c.2.1.8	131266
1t5eA	360	28.36	f.46.1.1	106436
1iukA	140	30.20	c.2.1.8	83712
1t3lA	337	30.88	b.34.2.1,c.37.1.1	106358,106359
1pixA	587	34.42	c.14.1.4,c.14.1.4	118578,118579
2bpsA	81	34.58		
2oixA	186	36.42		
1gcyA	527	38.84	b.71.1.1,c.1.8.1	27788,28775
2p1gA	249	44.73		
2ofzA	138	49.69		
1ouoA	210	49.92	d.4.1.6	93554
1cbyA	259	55.71	d.103.1.1	40705
2q9uA	414	57.79		
1gteA	1025	59.97	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	70440,70441,70442,70443,70444
1ofzA	312	60.57	b.68.8.1	86978
3cla	213	61.31		
2e63A	170	61.84		
2o3oA	254	65.89		
1oygA	447	69.03	b.67.2.2	93726
2au3A	407	69.40		
2apr	325	72.45		
2bg1A	494	73.76	e.3.1.1	128457
1agjA	242	74.21	b.47.1.1	25827
1ky3A	182	77.77	c.37.1.8	73193
2a1hA	365	81.37	e.17.1.1	125997
1hywA	68	82.82	d.186.1.1	61425
1v7pB	128	84.06	d.169.1.1	108407
2gagB	405	86.35