# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.2284		
2awkA	228	0.4073		
1zkoA	136	0.5278		
1y8oB	128	1.190	b.84.1.1	122759
1htp	131	1.201		
1hpcA	131	1.248	b.84.1.1	28221
1ghj	79	1.305		
2q4zA	312	1.762		
1bdo	80	1.821		
1k8mA	93	2.436	b.84.1.1	68314
3crkC	87	2.881		
2au3A	407	3.565		
2qj8A	332	3.743		
1bdoA	80	5.632	b.84.1.1	28214
2bcoA	350	6.042	c.56.5.7	128302
3cdxA	354	12.40		
2r44A	331	19.87		
1ec7A	446	21.30	c.1.11.2,d.54.1.1	29218,38862
1ekfA	365	23.52	e.17.1.1	59445
2a1hA	365	24.42	e.17.1.1	125997
2pz4A	239	25.04		
2oktA	342	27.09		
1yw4A	341	27.18	c.56.5.7	124131
2bpsA	81	28.00		
1w66A	232	29.15	d.104.1.3	120652
1pmiA	440	32.72	b.82.1.3	28114
1t5eA	360	33.92	f.46.1.1	106436
3cxjA	165	34.45		
1t3lA	337	34.55	b.34.2.1,c.37.1.1	106358,106359
1xbbA	291	38.26	d.144.1.7	115077
2o3oA	254	39.54		
1ofzA	312	40.17	b.68.8.1	86978
2yueA	168	43.59		
2qa1A	500	43.61		
2qf7A	1165	44.89		
1qhlA	227	46.48	c.37.1.12	32382
1whmA	92	47.54	b.34.10.1	114647
1gpr	162	49.53		
2hrvA	142	51.46	b.47.1.4	26429
2ra9A	150	55.98		
2r6uA	148	56.45		
1upqA	123	59.47	b.55.1.1	113392
1wpgA	994	60.88	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2bg1A	494	63.84	e.3.1.1	128457
1x31B	404	64.35		
1zs7A	190	65.75	b.122.1.1,d.17.6.4	125593,125594
2e63A	170	66.15		
1a02N	301	66.28	b.1.18.1,b.2.5.3	21923,22440
2oplA	187	66.58		
1wdxA	69	68.07		
3cx5A	431	68.17		
1r61A	207	68.80	c.8.8.1	97138
3cla	213	71.91		
1vlaA	150	72.48	d.227.1.2	108735
1tg0A	68	74.41		
2icrA	237	75.10		
1gy6A	127	75.80	d.17.4.2	70736
1kw3B	292	76.04	d.32.1.3,d.32.1.3	77549,77550
1gprA	162	76.72	b.84.3.1	28267
2coiA	386	78.94		
2dc0A	434	79.29		
2aynA	404	84.14	d.3.1.9	127563
2oziA	98	87.24		
1or0B	528	87.59		
2g6yA	217	88.66