# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2evbA 74 0.6062 1zkoA 136 1.848 2au3A 407 2.253 1bdo 80 2.983 1htp 131 3.354 1hpcA 131 3.517 b.84.1.1 28221 3crkC 87 3.834 1y8oB 128 5.241 b.84.1.1 122759 1bdoA 80 5.666 b.84.1.1 28214 1k8mA 93 5.799 b.84.1.1 68314 1ghj 79 5.918 2pyxA 526 6.258 2pz4A 239 7.640 1oygA 447 8.409 b.67.2.2 93726 1zruA 264 8.465 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1vhoA 346 8.903 b.49.3.1,c.56.5.4 100694,100695 2bcoA 350 8.992 c.56.5.7 128302 2bsdA 264 9.282 b.21.1.3,b.108.1.4,b.163.1.2 129081,129082,129083 1t3lA 337 9.487 b.34.2.1,c.37.1.1 106358,106359 2v2fF 390 10.33 3cx5A 431 11.19 1f3zA 161 11.79 b.84.3.1 28273 1yf3A 259 14.69 c.66.1.28 123046 2bvfA 459 15.44 3b5lB 198 17.57 2oktA 342 19.14 3cdxA 354 20.41 1r61A 207 20.55 c.8.8.1 97138 1lfaA 187 22.43 c.62.1.1 34122 1eexB 224 23.68 c.51.3.1 33213 2awkA 228 24.34 1q1cA 280 27.41 d.26.1.1,d.26.1.1 104474,104475 1t5oA 351 27.52 c.124.1.5 106459 3bljA 221 30.47 1mdbA 539 31.02 e.23.1.1 79008 2qqiA 318 31.23 2olnA 397 33.43 1a02N 301 34.25 b.1.18.1,b.2.5.3 21923,22440 2p4oA 306 34.73 1gprA 162 34.73 b.84.3.1 28267 1vqoA 240 35.02 b.34.5.3,b.40.4.5 120361,120362 2dfkA 402 35.11 1h8gA 95 36.34 b.109.1.1 65735 1yw4A 341 36.54 c.56.5.7 124131 2gm6A 208 36.78 2o07A 304 36.89 c.66.1.17 138862 1ec7A 446 36.91 c.1.11.2,d.54.1.1 29218,38862 1xynA 178 37.33 b.29.1.11 24322 1u67A 600 37.40 a.93.1.2,g.3.11.1 107697,107698 1ee6A 197 38.14 b.80.1.1 28024 1i0rA 169 38.20 b.45.1.2 61489 1j32A 388 38.46 c.67.1.1 77067 1gpr 162 40.23 1knbA 196 43.29 b.21.1.1 23841 1whmA 92 43.81 b.34.10.1 114647 1ekfA 365 44.05 e.17.1.1 59445 2qf4A 172 45.44 2qj8A 332 45.46 2a1hA 365 45.49 e.17.1.1 125997 1hbnC 248 45.57 d.58.31.1 60902 1w66A 232 45.88 d.104.1.3 120652 1mroC 247 46.01 d.58.31.1 39437 2fafA 608 46.81 2r37A 207 50.37 2o3oA 254 50.57 1sqwA 188 51.37 b.122.1.1,d.17.6.3 119033,119034 1yf2A 425 53.32 d.287.1.2,d.287.1.2 123042,123043 2z8fA 412 53.82 2aukA 190 54.12 1zdrA 164 55.77 1gybA 125 57.37 d.17.4.2 70744 2awgA 118 59.00 1zowA 313 59.14 1v2dA 381 60.21 c.67.1.1 108281 1gydB 315 60.47 b.67.2.1 70751 2bpsA 81 63.39 2r44A 331 63.66 1so7A 382 64.12 b.68.1.1 112106 1t5eA 360 64.82 f.46.1.1 106436 3cumA 302 65.47 1mqoA 227 68.69 d.157.1.1 103846 2i5qA 415 70.39 1ng0A 253 70.44 b.121.4.7 80475 3silA 379 71.35 b.68.1.1 27542 1ep3B 262 72.15 b.43.4.2,c.25.1.3 25664,31554 3c2uA 538 72.82 2yrrA 353 74.00 1shwB 181 74.68 b.18.1.4 105563 2b1xA 470 75.23 b.33.1.2,d.129.3.3 127675,127676 1musA 477 75.57 c.55.3.4 79494 1tdzA 272 76.10 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2e12A 101 79.16 1pjjA 271 82.73 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1xiyA 182 83.34 c.47.1.10 122022 1iugA 352 83.35 c.67.1.3 90699 1upqA 123 85.19 b.55.1.1 113392