# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q4zA	312	0.2339		
2evbA	74	0.3187		
2awkA	228	0.5496		
1ghj	79	0.7346		
1zkoA	136	0.8330		
1y8oB	128	1.164	b.84.1.1	122759
3crkC	87	1.303		
1htp	131	1.572		
1hpcA	131	1.610	b.84.1.1	28221
1bdo	80	2.698		
1k8mA	93	3.424	b.84.1.1	68314
2au3A	407	5.814		
2bcoA	350	7.196	c.56.5.7	128302
2qj8A	332	7.890		
1bdoA	80	8.928	b.84.1.1	28214
1whmA	92	19.23	b.34.10.1	114647
2r44A	331	24.59		
1yw4A	341	26.20	c.56.5.7	124131
1or0B	528	30.17		
2bpsA	81	32.67		
1w66A	232	33.01	d.104.1.3	120652
3cdxA	354	33.57		
2qf7A	1165	35.21		
3cla	213	40.52		
1xbbA	291	41.51	d.144.1.7	115077
2oplA	187	44.46		
1fm2B	520	48.17		
2aynA	404	48.52	d.3.1.9	127563
1clc	639	49.20		
1a02N	301	50.77	b.1.18.1,b.2.5.3	21923,22440
2pz4A	239	51.44		
1jq5A	370	51.74	e.22.1.2	67084
1qhlA	227	51.93	c.37.1.12	32382
1pmiA	440	52.60	b.82.1.3	28114
1r61A	207	53.08	c.8.8.1	97138
3cxjA	165	53.55		
1t5eA	360	54.91	f.46.1.1	106436
1p7hL	286	55.30	b.1.18.1,b.2.5.3	94271,94272
1gybA	125	59.08	d.17.4.2	70744
1t3lA	337	59.08	b.34.2.1,c.37.1.1	106358,106359
3cx5A	431	62.08		
1x31B	404	63.87		
1gcyA	527	66.04	b.71.1.1,c.1.8.1	27788,28775
2oktA	342	67.49		
2j58A	359	71.89		
1gy6A	127	72.23	d.17.4.2	70736
1ekfA	365	72.81	e.17.1.1	59445
2dc0A	434	73.01		
1w5rA	278	74.02	d.3.1.5	120643
1kxqE	120	76.70	b.1.1.1	73171
2o3oA	254	80.98		
2j97A	109	81.18		
1i0rA	169	82.71	b.45.1.2	61489
2oziA	98	84.18		
2a1hA	365	89.04	e.17.1.1	125997