# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.3334		
1zkoA	136	0.5807		
2awkA	228	0.5950		
2q4zA	312	0.6355		
1ghj	79	0.9016		
1htp	131	1.185		
1hpcA	131	1.516	b.84.1.1	28221
1y8oB	128	1.548	b.84.1.1	122759
3crkC	87	1.819		
1bdo	80	2.394		
1k8mA	93	4.275	b.84.1.1	68314
2au3A	407	4.802		
2qj8A	332	5.131		
2bcoA	350	6.073	c.56.5.7	128302
1bdoA	80	8.764	b.84.1.1	28214
2bpsA	81	18.52		
1pmiA	440	24.72	b.82.1.3	28114
1w66A	232	25.56	d.104.1.3	120652
1yw4A	341	27.09	c.56.5.7	124131
2dc0A	434	27.69		
1wpgA	994	28.08	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1r61A	207	30.91	c.8.8.1	97138
2ofzA	138	31.81		
3cdxA	354	31.84		
2qf7A	1165	32.30		
2j58A	359	32.86		
2r44A	331	33.76		
1t5eA	360	34.05	f.46.1.1	106436
2o3oA	254	35.97		
2pz4A	239	36.78		
1qhlA	227	37.35	c.37.1.12	32382
1xbbA	291	37.82	d.144.1.7	115077
2a1hA	365	38.74	e.17.1.1	125997
1t3lA	337	39.42	b.34.2.1,c.37.1.1	106358,106359
3cla	213	43.47		
3cx5A	431	44.58		
1ekfA	365	45.70	e.17.1.1	59445
1whmA	92	46.96	b.34.10.1	114647
1or0B	528	50.86		
1gy6A	127	58.57	d.17.4.2	70736
2oktA	342	61.96		
1x31B	404	62.09		
1w5rA	278	62.98	d.3.1.5	120643
1a02N	301	65.36	b.1.18.1,b.2.5.3	21923,22440
2j97A	109	66.93		
2yueA	168	68.21		
1clc	639	69.92		
2aynA	404	72.06	d.3.1.9	127563
1ec7A	446	76.85	c.1.11.2,d.54.1.1	29218,38862
1p7hL	286	77.13	b.1.18.1,b.2.5.3	94271,94272
3cxjA	165	79.64		
2o07A	304	81.42	c.66.1.17	138862
2icrA	237	82.86		
1fm2B	520	88.68		
2g1pA	278	89.14