# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	2.225		
1y8oB	128	3.116	b.84.1.1	122759
2q4zA	312	3.953		
2awkA	228	4.341		
2qj8A	332	5.146		
2bcoA	350	5.679	c.56.5.7	128302
3crkC	87	8.157		
1ghj	79	8.949		
1zkoA	136	9.650		
1k8mA	93	10.88	b.84.1.1	68314
1bdo	80	11.37		
3cdxA	354	17.12		
1xbbA	291	20.08	d.144.1.7	115077
2dc0A	434	20.43		
1bdoA	80	29.41	b.84.1.1	28214
1htp	131	29.47		
1x31B	404	32.57		
1w66A	232	33.63	d.104.1.3	120652
1hpcA	131	34.48	b.84.1.1	28221
1whmA	92	49.28	b.34.10.1	114647
3b9eA	584	77.06		
3cxjA	165	80.69		
1h70A	255	81.15	d.126.1.3	60711
2bpsA	81	85.40		
1t3lA	337	87.21	b.34.2.1,c.37.1.1	106358,106359