# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qj8A 332 0.05491 1y8oB 128 0.7405 b.84.1.1 122759 3cdxA 354 0.8598 3crkC 87 2.688 1bdo 80 3.215 2evbA 74 3.255 1bdoA 80 7.122 b.84.1.1 28214 1pieA 419 9.701 d.14.1.5,d.58.26.7 94706,94707 2bcoA 350 13.45 c.56.5.7 128302 2eisA 133 15.83 1vpmA 169 16.60 d.38.1.1 113967 2hljA 157 17.05 d.38.1.1 136570 2pg9A 337 17.95 1nnwA 252 19.65 d.159.1.5 80674 1pmnA 364 21.74 d.144.1.7 94907 1bdfA 235 22.47 d.74.3.1,d.181.1.1 39727,42602 2pmqA 377 26.98 2dstA 131 27.76 1j1iA 296 28.23 c.69.1.10 83977 2o0uA 364 28.40 d.144.1.7 138868 1e42A 258 28.61 b.1.10.1,d.105.1.1 22316,40792 1wbsA 360 29.15 d.144.1.7 120860 1qpoA 284 29.60 c.1.17.1,d.41.2.1 29561,38597 1sb2B 129 31.25 d.169.1.1 118928 1uk8A 282 32.89 c.69.1.10 107907 1quqB 121 33.32 b.40.4.3 25305 2gjcA 326 33.35 c.3.1.6 135280 1olzA 663 34.50 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2yzhA 171 34.71 1qftA 175 34.80 b.60.1.1 27151 2d1uA 104 37.52 1rm6B 324 39.95 d.87.2.1,d.145.1.3 111874,111875 2fujA 137 42.00 d.38.1.1 134175 1mkaA 171 43.26 d.38.1.2 38543 2cw9A 194 43.98 d.17.4.13 130920 2bs3A 656 45.98 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1a0rB 340 46.34 b.69.4.1 27658 1xaoA 121 47.19 1yu1A 381 47.87 b.163.1.1,d.169.1.8 124027,124028 3b7kA 333 49.08 1ghj 79 49.98 2e63A 170 49.99 2ahdA 165 51.29 d.159.1.7 126752 2bs2A 660 54.70 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1w7jA 795 54.78 b.34.3.1,c.37.1.9 120688,120689 1xfcA 384 56.02 1bebA 162 57.78 b.60.1.1 27115 1y37A 304 58.40 1k8mA 93 58.90 b.84.1.1 68314 2pi2E 142 59.45 2ge3A 170 61.27 d.108.1.1 135044 2yvtA 260 61.76 1zkoA 136 65.28 2o2iA 300 66.12 1ec7A 446 68.09 c.1.11.2,d.54.1.1 29218,38862 1d7qA 143 68.94 b.40.4.5 25331 2i79A 172 70.21 2cz9A 350 71.73 2b7nA 273 73.22 2g30A 258 73.22 b.1.10.1,d.105.1.1 134546,134547 1jpcA 109 73.92 b.78.1.1 27986 1b2pA 119 75.71 b.78.1.1 27998 2uzxB 727 75.96 1qh5A 260 77.45 d.157.1.2 42057 1obpA 159 77.48 b.60.1.1 27092 2qvbA 297 80.14 1brwA 433 80.36 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1gu3A 149 80.55 b.18.1.14 76350 2uwnA 187 81.20 1jysA 242 82.63 c.56.2.1 77216 2cu6A 103 83.89 d.52.8.2 130803 1bvqA 141 84.43 d.38.1.1 38542 1gt1A 159 85.88 b.60.1.1 90515 2pbiB 354 86.20 1u5fA 148 87.09 b.55.1.1 119542