PFRMAT RR TARGET T0397 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 GTKLISVPAEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGT VIFMNEIPSERANYVFYMLEE 82 94 0 8 0.753273 82 95 0 8 0.684923 82 97 0 8 0.67987 82 112 0 8 0.810974 82 113 0 8 0.742805 82 122 0 8 0.69321 82 124 0 8 0.711093 82 133 0 8 0.674767 82 148 0 8 0.769129 83 92 0 8 0.842699 83 93 0 8 0.919794 83 94 0 8 0.928349 83 95 0 8 0.899422 83 96 0 8 0.929726 83 97 0 8 0.910628 83 99 0 8 0.838374 83 100 0 8 0.669355 83 101 0 8 0.763083 83 102 0 8 0.732241 83 103 0 8 0.860516 83 104 0 8 0.727573 83 108 0 8 0.661391 83 109 0 8 0.783875 83 110 0 8 0.839879 83 111 0 8 0.831363 83 112 0 8 0.935587 83 113 0 8 0.774582 83 114 0 8 0.732201 83 119 0 8 0.725365 83 121 0 8 0.847663 83 122 0 8 0.893125 83 123 0 8 0.719398 83 124 0 8 0.751654 83 128 0 8 0.66015 83 129 0 8 0.744898 83 130 0 8 0.817985 83 131 0 8 0.884585 83 132 0 8 0.898295 83 133 0 8 0.911418 83 134 0 8 0.767472 83 143 0 8 0.736151 83 144 0 8 0.87246 83 145 0 8 0.797309 83 146 0 8 0.872344 83 147 0 8 0.85936 83 148 0 8 0.906594 84 93 0 8 0.891343 84 94 0 8 0.918509 84 95 0 8 0.887578 84 96 0 8 0.903347 84 97 0 8 0.888515 84 99 0 8 0.80332 84 101 0 8 0.792332 84 103 0 8 0.77526 84 104 0 8 0.667999 84 108 0 8 0.655654 84 109 0 8 0.768477 84 110 0 8 0.785771 84 111 0 8 0.784384 84 112 0 8 0.902553 84 113 0 8 0.713391 84 114 0 8 0.654865 84 119 0 8 0.677033 84 121 0 8 0.787155 84 122 0 8 0.851611 84 123 0 8 0.653721 84 124 0 8 0.710448 84 129 0 8 0.691891 84 130 0 8 0.752471 84 131 0 8 0.858362 84 132 0 8 0.845039 84 133 0 8 0.880548 84 134 0 8 0.733954 84 143 0 8 0.696475 84 144 0 8 0.745876 84 145 0 8 0.745339 84 146 0 8 0.785624 84 147 0 8 0.809663 84 148 0 8 0.767951 85 94 0 8 0.881617 85 95 0 8 0.849809 85 96 0 8 0.857718 85 97 0 8 0.838169 85 99 0 8 0.730318 85 101 0 8 0.702653 85 103 0 8 0.699302 85 108 0 8 0.659625 85 109 0 8 0.758732 85 110 0 8 0.755789 85 111 0 8 0.691801 85 112 0 8 0.77462 85 121 0 8 0.670188 85 122 0 8 0.701962 85 129 0 8 0.707248 85 130 0 8 0.711081 85 131 0 8 0.732132 85 132 0 8 0.709835 85 133 0 8 0.718097 85 143 0 8 0.682055 85 144 0 8 0.695309 85 146 0 8 0.653387 86 95 0 8 0.879181 86 96 0 8 0.894121 86 97 0 8 0.863519 86 99 0 8 0.772093 86 100 0 8 0.658935 86 101 0 8 0.703864 86 103 0 8 0.813189 86 104 0 8 0.65798 86 108 0 8 0.69654 86 109 0 8 0.847253 86 110 0 8 0.830884 86 111 0 8 0.811312 86 112 0 8 0.920682 86 114 0 8 0.675321 86 119 0 8 0.748505 86 120 0 8 0.705944 86 121 0 8 0.756626 86 122 0 8 0.780217 86 124 0 8 0.669616 86 128 0 8 0.718189 86 129 0 8 0.786064 86 130 0 8 0.820456 86 131 0 8 0.820393 86 132 0 8 0.871381 86 133 0 8 0.915025 86 134 0 8 0.809913 86 143 0 8 0.756834 86 144 0 8 0.765824 86 145 0 8 0.823291 86 146 0 8 0.745671 86 147 0 8 0.74036 86 148 0 8 0.659891 87 96 0 8 0.831461 87 97 0 8 0.750755 87 98 0 8 0.663893 87 99 0 8 0.65176 87 100 0 8 0.657626 87 109 0 8 0.675629 87 110 0 8 0.732742 87 121 0 8 0.671385 87 130 0 8 0.670689 87 143 0 8 0.685643 87 146 0 8 0.663685 88 97 0 8 0.827036 88 98 0 8 0.704872 88 99 0 8 0.778887 88 100 0 8 0.675384 88 103 0 8 0.730484 88 104 0 8 0.676347 88 108 0 8 0.689924 88 109 0 8 0.76414 88 110 0 8 0.76967 88 111 0 8 0.775853 88 112 0 8 0.823787 88 114 0 8 0.693656 88 119 0 8 0.737751 88 121 0 8 0.71726 88 129 0 8 0.69825 88 130 0 8 0.756627 88 131 0 8 0.740054 88 132 0 8 0.794298 88 133 0 8 0.716353 88 143 0 8 0.738579 88 145 0 8 0.753209 90 99 0 8 0.670236 90 112 0 8 0.654344 90 146 0 8 0.649987 91 100 0 8 0.695566 91 102 0 8 0.752409 91 103 0 8 0.757989 91 104 0 8 0.694215 91 105 0 8 0.674221 91 109 0 8 0.661961 91 110 0 8 0.758728 91 111 0 8 0.699934 91 112 0 8 0.862166 91 113 0 8 0.751142 91 121 0 8 0.825972 91 122 0 8 0.809305 91 124 0 8 0.7063 91 130 0 8 0.712144 91 131 0 8 0.711463 91 132 0 8 0.733692 91 133 0 8 0.738709 91 135 0 8 0.743525 91 143 0 8 0.676307 91 146 0 8 0.859004 91 147 0 8 0.777121 91 148 0 8 0.794999 92 103 0 8 0.685056 92 104 0 8 0.661636 92 111 0 8 0.674402 92 112 0 8 0.812591 92 113 0 8 0.838621 92 114 0 8 0.702235 92 115 0 8 0.788147 92 121 0 8 0.688197 92 122 0 8 0.748302 92 124 0 8 0.657981 92 131 0 8 0.737798 92 132 0 8 0.713107 92 133 0 8 0.659295 92 146 0 8 0.661376 92 147 0 8 0.742947 92 148 0 8 0.725646 93 102 0 8 0.82837 93 103 0 8 0.805241 93 104 0 8 0.701994 93 105 0 8 0.695011 93 106 0 8 0.652663 93 108 0 8 0.681649 93 109 0 8 0.769511 93 110 0 8 0.851373 93 111 0 8 0.757642 93 112 0 8 0.867922 93 113 0 8 0.724002 93 114 0 8 0.664996 93 119 0 8 0.700441 93 121 0 8 0.844636 93 122 0 8 0.817173 93 129 0 8 0.676932 93 130 0 8 0.818328 93 131 0 8 0.801535 93 132 0 8 0.7772 93 133 0 8 0.769684 93 135 0 8 0.737181 93 143 0 8 0.779474 93 144 0 8 0.71008 93 145 0 8 0.673313 93 146 0 8 0.873792 93 147 0 8 0.767424 93 148 0 8 0.739641 94 103 0 8 0.81064 94 104 0 8 0.780045 94 108 0 8 0.692457 94 109 0 8 0.782814 94 110 0 8 0.835278 94 111 0 8 0.842724 94 112 0 8 0.89995 94 113 0 8 0.723219 94 114 0 8 0.759594 94 119 0 8 0.712897 94 121 0 8 0.818661 94 122 0 8 0.814485 94 124 0 8 0.682887 94 129 0 8 0.681632 94 130 0 8 0.788634 94 131 0 8 0.827927 94 132 0 8 0.893707 94 133 0 8 0.850599 94 134 0 8 0.689768 94 135 0 8 0.66828 94 143 0 8 0.736595 94 144 0 8 0.680416 94 145 0 8 0.809403 94 146 0 8 0.74145 94 147 0 8 0.764414 94 148 0 8 0.66889 95 109 0 8 0.895285 95 110 0 8 0.888735 95 111 0 8 0.767016 95 112 0 8 0.869069 95 120 0 8 0.734835 95 121 0 8 0.821638 95 122 0 8 0.802944 95 129 0 8 0.705027 95 130 0 8 0.833976 95 131 0 8 0.731773 95 132 0 8 0.800003 95 133 0 8 0.831068 95 134 0 8 0.66744 95 135 0 8 0.687141 95 143 0 8 0.775221 95 144 0 8 0.662597 95 145 0 8 0.708107 95 146 0 8 0.732159 95 147 0 8 0.728126 96 105 0 8 0.658379 96 107 0 8 0.700052 96 108 0 8 0.767194 96 109 0 8 0.923409 96 110 0 8 0.954446 96 111 0 8 0.883924 96 112 0 8 0.91944 96 113 0 8 0.710752 96 114 0 8 0.686091 96 117 0 8 0.680187 96 119 0 8 0.764795 96 120 0 8 0.773999 96 121 0 8 0.914161 96 122 0 8 0.87238 96 125 0 8 0.737185 96 128 0 8 0.777043 96 129 0 8 0.840588 96 130 0 8 0.927747 96 131 0 8 0.865928 96 132 0 8 0.901787 96 133 0 8 0.884601 96 134 0 8 0.710548 96 135 0 8 0.796999 96 143 0 8 0.862787 96 144 0 8 0.789801 96 145 0 8 0.827723 96 146 0 8 0.869711 96 147 0 8 0.857995 96 148 0 8 0.675872 97 107 0 8 0.754283 97 108 0 8 0.80837 97 109 0 8 0.841093 97 110 0 8 0.884571 97 111 0 8 0.873945 97 112 0 8 0.88586 97 113 0 8 0.790662 97 114 0 8 0.727048 97 119 0 8 0.87286 97 121 0 8 0.797188 97 122 0 8 0.797752 97 129 0 8 0.699155 97 130 0 8 0.81113 97 131 0 8 0.904787 97 132 0 8 0.89421 97 133 0 8 0.82161 97 135 0 8 0.669424 97 143 0 8 0.750101 97 144 0 8 0.728381 97 145 0 8 0.809083 97 146 0 8 0.804541 97 147 0 8 0.7997 97 148 0 8 0.651184 98 108 0 8 0.695735 98 109 0 8 0.820652 98 110 0 8 0.870983 98 111 0 8 0.731055 98 112 0 8 0.734406 98 120 0 8 0.654336 98 121 0 8 0.790922 98 122 0 8 0.678448 98 128 0 8 0.669307 98 129 0 8 0.685668 98 130 0 8 0.789765 98 132 0 8 0.67209 98 135 0 8 0.701635 98 143 0 8 0.767467 99 108 0 8 0.83989 99 109 0 8 0.811284 99 110 0 8 0.845391 99 111 0 8 0.842018 99 112 0 8 0.841869 99 113 0 8 0.820269 99 114 0 8 0.721835 99 115 0 8 0.699107 99 119 0 8 0.882416 99 121 0 8 0.763258 99 122 0 8 0.7304 99 129 0 8 0.66453 99 130 0 8 0.767557 99 131 0 8 0.900817 99 132 0 8 0.843526 99 133 0 8 0.758134 99 135 0 8 0.675846 99 141 0 8 0.664099 99 143 0 8 0.727023 99 144 0 8 0.679622 99 145 0 8 0.770789 99 146 0 8 0.769773 99 147 0 8 0.766093 100 109 0 8 0.819142 100 110 0 8 0.864773 100 111 0 8 0.773243 100 112 0 8 0.833977 100 114 0 8 0.657963 100 121 0 8 0.872531 100 122 0 8 0.764021 100 125 0 8 0.740602 100 128 0 8 0.651669 100 129 0 8 0.66818 100 130 0 8 0.823246 100 132 0 8 0.731078 100 133 0 8 0.720249 100 135 0 8 0.817264 100 143 0 8 0.787652 100 146 0 8 0.67949 100 147 0 8 0.720264 101 111 0 8 0.77561 101 112 0 8 0.874012 101 113 0 8 0.695278 101 114 0 8 0.668059 101 119 0 8 0.716055 101 122 0 8 0.780128 101 124 0 8 0.656373 101 131 0 8 0.735526 101 132 0 8 0.74094 101 133 0 8 0.792124 101 134 0 8 0.678745 101 146 0 8 0.668491 101 147 0 8 0.714843 101 148 0 8 0.672229 102 111 0 8 0.735007 102 112 0 8 0.821715 102 113 0 8 0.658842 102 121 0 8 0.774136 102 122 0 8 0.741871 102 130 0 8 0.684434 102 131 0 8 0.675656 102 132 0 8 0.673765 102 133 0 8 0.65701 102 135 0 8 0.664975 102 143 0 8 0.669341 102 146 0 8 0.751715 102 147 0 8 0.675663 103 112 0 8 0.916531 103 114 0 8 0.708692 103 119 0 8 0.708709 103 121 0 8 0.819386 103 122 0 8 0.801016 103 128 0 8 0.758835 103 129 0 8 0.8174 103 130 0 8 0.81496 103 131 0 8 0.714232 103 132 0 8 0.790548 103 133 0 8 0.836547 103 134 0 8 0.693399 103 135 0 8 0.724823 103 143 0 8 0.756753 103 144 0 8 0.706711 103 145 0 8 0.682966 103 146 0 8 0.739828 103 147 0 8 0.763711 103 148 0 8 0.707753 104 114 0 8 0.707625 104 119 0 8 0.728251 104 121 0 8 0.718 104 131 0 8 0.666048 104 132 0 8 0.738579 104 143 0 8 0.662646 104 145 0 8 0.686339 107 119 0 8 0.718954 107 121 0 8 0.777312 107 122 0 8 0.800863 107 123 0 8 0.695863 107 124 0 8 0.730258 107 131 0 8 0.893668 107 132 0 8 0.77182 107 133 0 8 0.718667 107 135 0 8 0.667513 107 145 0 8 0.661643 107 146 0 8 0.704814 107 147 0 8 0.772092 107 148 0 8 0.751105 108 119 0 8 0.831459 108 121 0 8 0.834515 108 122 0 8 0.858385 108 123 0 8 0.745262 108 124 0 8 0.785358 108 130 0 8 0.678325 108 131 0 8 0.899844 108 132 0 8 0.849423 108 133 0 8 0.803285 108 134 0 8 0.686941 108 135 0 8 0.700241 108 145 0 8 0.710804 108 146 0 8 0.76011 108 147 0 8 0.811659 108 148 0 8 0.784642 109 119 0 8 0.768721 109 120 0 8 0.864118 109 121 0 8 0.949187 109 122 0 8 0.958213 109 124 0 8 0.878141 109 125 0 8 0.795122 109 126 0 8 0.704077 109 128 0 8 0.75338 109 129 0 8 0.823136 109 130 0 8 0.934795 109 131 0 8 0.916044 109 132 0 8 0.954163 109 133 0 8 0.960085 109 134 0 8 0.871839 109 135 0 8 0.85888 109 136 0 8 0.784991 109 142 0 8 0.690541 109 143 0 8 0.857701 109 144 0 8 0.791651 109 145 0 8 0.865663 109 146 0 8 0.89947 109 147 0 8 0.90867 109 148 0 8 0.831093 110 119 0 8 0.832973 110 120 0 8 0.866027 110 121 0 8 0.966449 110 122 0 8 0.961888 110 123 0 8 0.852989 110 124 0 8 0.846534 110 125 0 8 0.860777 110 126 0 8 0.689178 110 128 0 8 0.836968 110 129 0 8 0.881207 110 130 0 8 0.96093 110 131 0 8 0.935007 110 132 0 8 0.9602 110 133 0 8 0.949524 110 134 0 8 0.844854 110 135 0 8 0.90056 110 136 0 8 0.738346 110 142 0 8 0.698002 110 143 0 8 0.908901 110 144 0 8 0.843535 110 145 0 8 0.883018 110 146 0 8 0.919438 110 147 0 8 0.919247 110 148 0 8 0.830241 111 120 0 8 0.826714 111 121 0 8 0.918734 111 122 0 8 0.910403 111 123 0 8 0.739269 111 124 0 8 0.756375 111 125 0 8 0.683484 111 128 0 8 0.77243 111 129 0 8 0.820353 111 130 0 8 0.888187 111 131 0 8 0.896348 111 132 0 8 0.927053 111 133 0 8 0.907426 111 134 0 8 0.749827 111 135 0 8 0.714297 111 142 0 8 0.658227 111 143 0 8 0.815256 111 144 0 8 0.787044 111 145 0 8 0.836091 111 146 0 8 0.810152 111 147 0 8 0.802402 111 148 0 8 0.666181 112 121 0 8 0.93174 112 122 0 8 0.922893 112 123 0 8 0.745792 112 124 0 8 0.880996 112 125 0 8 0.672774 112 126 0 8 0.75658 112 127 0 8 0.736294 112 128 0 8 0.827706 112 129 0 8 0.872259 112 130 0 8 0.914725 112 131 0 8 0.899223 112 132 0 8 0.929898 112 133 0 8 0.95458 112 134 0 8 0.84101 112 135 0 8 0.676899 112 136 0 8 0.768534 112 142 0 8 0.739526 112 143 0 8 0.850776 112 144 0 8 0.836203 112 145 0 8 0.877413 112 146 0 8 0.824251 112 147 0 8 0.821863 112 148 0 8 0.736401 113 122 0 8 0.663911 113 130 0 8 0.650968 113 131 0 8 0.736102 114 128 0 8 0.700665 114 129 0 8 0.725232 114 130 0 8 0.724528 114 131 0 8 0.679597 114 132 0 8 0.693987 114 143 0 8 0.740782 114 145 0 8 0.673925 115 131 0 8 0.663445 117 130 0 8 0.762951 117 131 0 8 0.698057 117 132 0 8 0.795405 117 133 0 8 0.781167 117 134 0 8 0.697894 117 135 0 8 0.842886 117 143 0 8 0.676045 117 146 0 8 0.712595 117 147 0 8 0.81351 117 148 0 8 0.801141 118 131 0 8 0.789333 118 132 0 8 0.807259 118 133 0 8 0.851245 118 134 0 8 0.780562 118 136 0 8 0.742998 118 146 0 8 0.678498 118 147 0 8 0.80445 118 148 0 8 0.844708 119 128 0 8 0.792577 119 129 0 8 0.848976 119 130 0 8 0.942193 119 131 0 8 0.97985 119 132 0 8 0.976319 119 133 0 8 0.962688 119 134 0 8 0.874567 119 135 0 8 0.865041 119 136 0 8 0.787112 119 141 0 8 0.681262 119 142 0 8 0.671858 119 143 0 8 0.840031 119 144 0 8 0.840824 119 145 0 8 0.920743 119 146 0 8 0.927569 119 147 0 8 0.934034 119 148 0 8 0.892399 120 129 0 8 0.808945 120 130 0 8 0.890053 120 132 0 8 0.913576 120 133 0 8 0.915216 120 134 0 8 0.796028 120 135 0 8 0.79333 120 136 0 8 0.675507 120 143 0 8 0.786866 120 145 0 8 0.761175 120 146 0 8 0.815202 120 147 0 8 0.839902 120 148 0 8 0.763226 121 130 0 8 0.964274 121 131 0 8 0.897779 121 132 0 8 0.926807 121 133 0 8 0.893914 121 134 0 8 0.730522 121 135 0 8 0.880109 121 142 0 8 0.683101 121 143 0 8 0.873817 121 144 0 8 0.781921 121 145 0 8 0.817356 121 146 0 8 0.838645 121 147 0 8 0.84124 121 148 0 8 0.676974 122 131 0 8 0.941227 122 132 0 8 0.93885 122 133 0 8 0.924506 122 134 0 8 0.773737 122 135 0 8 0.767957 122 142 0 8 0.772399 122 143 0 8 0.875943 122 144 0 8 0.843518 122 145 0 8 0.837835 122 146 0 8 0.851918 122 147 0 8 0.846488 122 148 0 8 0.732349 123 132 0 8 0.726111 123 133 0 8 0.724868 123 144 0 8 0.683957 124 133 0 8 0.81332 124 134 0 8 0.741456 124 143 0 8 0.710238 124 144 0 8 0.684936 124 145 0 8 0.678918 125 135 0 8 0.706317 125 143 0 8 0.714547 126 136 0 8 0.798105 126 148 0 8 0.662123 127 136 0 8 0.842341 127 148 0 8 0.81772 128 143 0 8 0.772851 128 144 0 8 0.748265 128 145 0 8 0.78906 128 146 0 8 0.869527 128 147 0 8 0.919773 128 148 0 8 0.922465 129 140 0 8 0.733569 129 143 0 8 0.889971 129 144 0 8 0.89001 129 145 0 8 0.909897 129 146 0 8 0.942976 129 147 0 8 0.953647 129 148 0 8 0.941924 130 140 0 8 0.717048 130 142 0 8 0.799446 130 143 0 8 0.958307 130 144 0 8 0.942226 130 145 0 8 0.962765 130 146 0 8 0.970964 130 147 0 8 0.967536 130 148 0 8 0.898472 131 140 0 8 0.738981 131 141 0 8 0.775054 131 142 0 8 0.883198 131 143 0 8 0.957093 131 144 0 8 0.972041 131 145 0 8 0.978836 131 146 0 8 0.976452 131 147 0 8 0.968016 131 148 0 8 0.916274 132 141 0 8 0.752992 132 142 0 8 0.867817 132 143 0 8 0.95663 132 144 0 8 0.961808 132 145 0 8 0.975442 132 146 0 8 0.966443 132 147 0 8 0.950719 132 148 0 8 0.863452 133 142 0 8 0.892105 133 143 0 8 0.94678 133 144 0 8 0.956133 133 145 0 8 0.967499 133 146 0 8 0.957508 133 147 0 8 0.941295 133 148 0 8 0.892363 134 143 0 8 0.884862 134 144 0 8 0.889108 134 145 0 8 0.893366 134 148 0 8 0.812229 135 145 0 8 0.8618 135 146 0 8 0.865858 135 147 0 8 0.852315 136 145 0 8 0.844246 136 146 0 8 0.808607 136 147 0 8 0.801382 136 148 0 8 0.759049 139 148 0 8 0.684627 END