// This is based on the CASP7 cost function, with some updates // to take advantage of new features. // Weighting is rather arbitrary. // I reduced soft_clashes, to keep from tearing apart nearly // right packing. It needs to be gradually increased. ConstraintSet known_ssbond SSBond C46 C49 SetCost \ known_ssbond 4 \ align_constraints 10 \ pred_nb11_back 35 \ pred_alpha_back 15 \ pred_n_notor_back 5 \ pred_bys_back 5 \ pred_pb_back 3 \ wet6.5 15 dry5 15 dry6.5 15 dry8 30 dry12 30 \ phobic_fit 3 \ sidechain 5 \ n_ca_c 2 bad_peptide 5 \ soft_clashes 150 backbone_clashes 10 \ break 250 \ hbond_geom 15 \ hbond_geom_backbone 20 \ hbond_geom_beta 20 \ hbond_geom_beta_pair 40