Best Alignments for T0396

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1oqcA	2.4215e-17	1oqcA/T0396-1oqcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.24.15.1
1jr8A	1.6765e-16	1jr8A/T0396-1jr8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.24.15.1
2nytA	2.5151e+00	2nytA/T0396-2nytA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2aj0A	3.8999e+00	2aj0A/T0396-2aj0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wn5A	6.5033e+00	1wn5A/T0396-1wn5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
1cttA	7.0176e+00	1cttA/T0396-1cttA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1 c.97.1.1
1wkqA	7.2312e+00	1wkqA/T0396-1wkqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1ctt	1.0706e+01	1ctt/T0396-1ctt-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cc8A	1.1603e+01	1cc8A/T0396-1cc8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
1z3aA	1.3397e+01	1z3aA/T0396-1z3aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2z3hA	1.3605e+01	2z3hA/T0396-2z3hA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a8nA	1.4114e+01	2a8nA/T0396-2a8nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2nx8A	1.5950e+01	2nx8A/T0396-2nx8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1p6oA	1.6870e+01	1p6oA/T0396-1p6oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2b3jA	1.6924e+01	2b3jA/T0396-2b3jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1r5tA	1.7966e+01	1r5tA/T0396-1r5tA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
1uwzA	2.3941e+01	1uwzA/T0396-1uwzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
3b8fA	2.5019e+01	3b8fA/T0396-3b8fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ds5A	2.5678e+01	2ds5A/T0396-2ds5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.11
2h8lA	2.6159e+01	2h8lA/T0396-2h8lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001