# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	6.83e-14	a.24.15.1	87264
1jr8A	117	1.83e-13	a.24.15.1	67115
2aj0A	71	1.461		
2nytA	190	3.277		
1wkqA	164	4.646	c.97.1.2	109393
1wn5A	130	6.219	c.97.1.1	121082
1cttA	294	6.419	c.97.1.1,c.97.1.1	36022,36023
1cc8A	73	7.354	d.58.17.1	39343
1ctt	294	9.815		
2q3pA	112	11.67	d.58.4.4	139798
2z3hA	130	11.70		
2h8lA	252	12.15		
2sasA	185	14.36	a.39.1.5	17258
2fiyA	309	14.71	e.59.1.1	133540
1va6A	518	16.64	d.128.1.4	113598
1rp4A	389	17.33	a.227.1.1	105027
2q01A	497	17.58		
1uwzA	136	19.73	c.97.1.1	108081
1r5tA	142	20.11	c.97.1.1	104812
1jtkA	136	20.82	c.97.1.1	71862
1a99A	344	21.19	c.94.1.1	35812
2ahmA	88	23.11	a.8.9.1	126760
2f2lA	167	23.15	d.118.1.1	132843
1mwyA	73	23.82	d.58.17.1	79616
2vlgA	111	24.51		
2eppA	66	24.81		
2agaA	190	27.26		
2nx8A	179	27.38		
2oy9A	98	28.07		
1vq2A	193	29.81	c.97.1.2	114004
2hjnA	236	31.11		
1y3jA	77	31.33		
1z3aA	168	32.08	c.97.1.2	124396
2fqhA	109	32.44		
1tr0A	108	32.90	d.58.4.4	107261
1dxsA	80	33.13	a.60.1.2	17944
1fe0A	68	33.36	d.58.17.1	39345
2a8nA	144	35.19	c.97.1.2	126408
2ds5A	51	35.25	g.39.1.11	131681
2b3jA	159	35.90	c.97.1.2	127787
1rwjA	82	36.35	a.138.1.1	105114
1cf7B	95	37.19	a.4.5.17	16152
1zu1A	127	38.26		
1ovxA	67	38.97	g.39.1.11	93622
1gu9A	177	38.99	a.152.1.1	65540
2p09A	78	39.82		
3b8fA	142	39.94		
1c8cA	64	40.98	b.34.13.1	59084
1azpA	66	41.43	b.34.13.1	37467
2fr5A	146	42.84	c.97.1.1	133965
1xyiA	66	43.89		
2af4C	333	44.30	c.77.1.5	126656
2bijA	305	45.06		
1tiyA	164	46.65	c.97.1.2	107012
1v1dA	31	47.79	j.6.1.1	119817
1vkeA	133	48.34	a.152.1.2	108650
2f2lX	167	48.96	d.118.1.1	132844
2hvwA	184	50.30		
1faoA	126	51.00	b.55.1.1	26974
1p6oA	161	51.43	c.97.1.2	94185
2h21A	440	52.75	a.166.1.1,b.85.7.3	135976,135977
2ezhA	75	53.29	a.4.1.2	16029
1d4vA	117	53.59	g.24.1.1,g.24.1.1,g.24.1.1	44915,44916,44917
1osdA	72	55.03	d.58.17.1	104022
1lw1A	177	58.84	a.152.1.1	74290
2dx8A	67	59.22		
2jwhA	48	62.88		
1uw1A	80	63.10	k.42.1.1	100069
1ykhA	108	64.96	a.252.1.2	123518
2ebdA	309	65.25		
1sxrA	183	65.50	d.118.1.1	106101
1mhqA	148	67.72	a.118.9.2	84973
1oohA	126	70.17	a.39.2.1	93383
4mbp	370	71.40		
2qeuA	141	71.77		
1anf	370	72.00		
1nhyA	219	72.11	a.45.1.1,c.47.1.5	80520,80521
1gyxA	76	72.69	d.80.1.1	76387
1smbA	154	75.12	d.111.1.1	105756
1j3gA	187	78.06	d.118.1.1	77075
2elxA	35	80.19		
2j9wA	102	80.28		
1gpuA	680	81.01	c.36.1.10,c.36.1.6,c.48.1.1	65454,65455,65456
2g3kA	94	81.51	a.24.28.1	134562
2bexA	460	83.15	c.10.1.1	128398
1kv4A	42	83.48	j.4.1.3	73051
2iazA	113	83.96		
1ppt	36	86.07		
1auoA	218	88.12	c.69.1.14	34716
1sk4A	163	88.60	d.118.1.1	105664
2heuA	401	89.37		
3c8yA	574	89.60		
2i3sB	36	89.98