# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.84e-14 a.24.15.1 87264 1jr8A 117 3.85e-14 a.24.15.1 67115 1wn5A 130 0.7792 c.97.1.1 121082 2aj0A 71 0.9816 1cc8A 73 1.799 d.58.17.1 39343 2nytA 190 1.879 2z3hA 130 2.539 1wkqA 164 2.573 c.97.1.2 109393 1cttA 294 3.287 c.97.1.1,c.97.1.1 36022,36023 1ovxA 67 4.430 g.39.1.11 93622 1va6A 518 4.577 d.128.1.4 113598 2ds5A 51 4.598 g.39.1.11 131681 1ctt 294 4.838 1fe0A 68 6.027 d.58.17.1 39345 1dxsA 80 6.635 a.60.1.2 17944 2q01A 497 6.991 1c8cA 64 7.196 b.34.13.1 59084 2g84A 197 7.311 c.97.1.2 134766 1z3aA 168 7.333 c.97.1.2 124396 2a8nA 144 7.670 c.97.1.2 126408 2nx8A 179 7.745 2b3jA 159 8.773 c.97.1.2 127787 1r5tA 142 9.609 c.97.1.1 104812 1ubkL 534 9.99 e.18.1.1 88422 2sasA 185 10.32 a.39.1.5 17258 1uwzA 136 10.95 c.97.1.1 108081 2q3pA 112 11.03 d.58.4.4 139798 1jtkA 136 11.51 c.97.1.1 71862 2bijA 305 11.69 1p6oA 161 12.12 c.97.1.2 94185 1azpA 66 12.24 b.34.13.1 37467 2p09A 78 12.35 2agaA 190 12.70 2dx8A 67 13.09 1tadA 324 14.13 a.66.1.1,c.37.1.8 18194,32077 1vq2A 193 14.98 c.97.1.2 114004 1xyiA 66 15.21 2f2lA 167 15.24 d.118.1.1 132843 1vkeA 133 15.97 a.152.1.2 108650 2h8lA 252 16.19 1uw1A 80 17.70 k.42.1.1 100069 2ezhA 75 17.75 a.4.1.2 16029 2eppA 66 18.65 2fr5A 146 19.01 c.97.1.1 133965 1rp4A 389 19.78 a.227.1.1 105027 2pd2A 108 19.91 1wwrA 171 20.42 c.97.1.2 121366 1tiyA 164 20.91 c.97.1.2 107012 2qeuA 141 21.08 1a99A 344 21.15 c.94.1.1 35812 1v1dA 31 21.34 j.6.1.1 119817 2oy9A 98 21.45 3b8fA 142 21.73 2h21A 440 22.47 a.166.1.1,b.85.7.3 135976,135977 1wimA 94 22.57 g.44.1.1 114677 2fiyA 309 22.91 e.59.1.1 133540 1e3dB 542 23.41 e.18.1.1 59189 2hi7B 176 23.47 1gu9A 177 23.76 a.152.1.1 65540 1v32A 101 23.78 a.42.1.1 100277 1jvrA 137 23.98 a.61.1.2 18132 3craA 265 25.01 1osdA 72 25.44 d.58.17.1 104022 1h2rL 534 25.64 e.18.1.1 43298 1t4fM 110 26.05 a.42.1.1 119144 2vlgA 111 29.04 1ecmA 109 29.11 a.130.1.1 19492 1smbA 154 29.13 d.111.1.1 105756 1yzbA 182 29.26 1o1xA 155 30.00 c.121.1.1 86553 2hvwA 184 30.70 1t15A 214 31.49 c.15.1.3,c.15.1.3 99067,99068 1rwjA 82 31.60 a.138.1.1 105114 1lw1A 177 32.08 a.152.1.1 74290 1ppt 36 33.83 1tr0A 108 34.24 d.58.4.4 107261 2ouiA 360 34.26 1tdpA 111 34.62 a.29.8.1 106781 2ahmA 88 34.89 a.8.9.1 126760 2heuA 401 35.08 2yrmA 43 37.31 2ap3A 199 40.18 a.24.27.1 127110 2ctuA 73 40.32 2eqoA 140 40.37 1d66A 66 41.48 g.38.1.1,h.1.3.1 45076,45510 1xzwA 426 41.65 b.1.12.1,d.159.1.1 116270,116271 1ykhA 108 43.02 a.252.1.2 123518 4mbp 370 43.68 2hszA 243 44.60 c.108.1.6 136726 1zcbA 362 44.64 a.66.1.1,c.37.1.8 124901,124902 1anf 370 45.04 2jwhA 48 46.05 1ku1A 230 46.52 a.118.3.1 72996 2f2lX 167 47.13 d.118.1.1 132844 1a1hA 90 48.93 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1a1gA 90 48.94 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 2hq9A 149 49.25 b.45.1.1 136659 2gmyA 153 49.32 a.152.1.3 135398 2obiA 183 49.52 2hl7A 84 49.80 2z3tA 425 50.82 1oohA 126 51.16 a.39.2.1 93383 1izoA 417 51.30 a.104.1.1 83851 1zaaC 87 51.48 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1bc8C 93 51.55 a.4.5.21 16168 1g2fC 90 51.73 k.12.1.1 60222 1njqA 39 52.05 g.37.1.3 85822 2iazA 113 52.84 1faoA 126 53.90 b.55.1.1 26974 1j55A 95 54.54 a.39.1.2 77078 2aalA 131 55.35 d.80.1.6 126483 2g3kA 94 55.59 a.24.28.1 134562 1zgwA 139 55.81 1gyxA 76 56.19 d.80.1.1 76387 1yjrA 75 56.37 2fccA 137 57.66 a.18.1.1 133264 1kzyC 259 58.08 c.15.1.4,c.15.1.4 73383,73384 2grjA 192 58.47 2gloA 59 59.39 1u8bA 133 59.90 1sxrA 183 60.08 d.118.1.1 106101 1x3zA 335 60.43 d.3.1.4 121673 1e1hB 174 60.52 1v5nA 89 60.52 g.49.1.3 108380 2af4C 333 61.01 c.77.1.5 126656 1cipA 353 61.49 a.66.1.1,c.37.1.8 18210,32093 1y3jA 77 61.93 2beqD 48 62.67 1ua4A 455 63.10 c.72.1.3 99128 1aayA 90 63.34 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1lu4A 136 63.40 c.47.1.10 91124 2axiA 115 63.60 a.42.1.1 127494 1zu1A 127 64.19 2pqxA 245 64.64 1a1iA 90 64.84 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1iioA 84 65.00 a.39.4.1 66150 1wilA 89 65.97 g.50.1.3 114676 2d58A 107 66.44 2b9dA 52 67.19 2d13A 227 67.23 c.26.2.1 131121 1sw2A 275 68.77 c.94.1.1 106064 2f6hX 419 69.39 2pu9A 110 70.19 1kv4A 42 70.35 j.4.1.3 73051 3ccgA 190 72.02 2d8dA 90 72.77 a.130.1.1 131329 2bf9A 36 73.08 j.6.1.1 116717 2cz9A 350 73.27 2rfbA 343 73.31 2hdpA 63 73.44 2czrA 226 73.60 1dljA 402 73.98 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2hjnA 236 74.31 2e01A 457 75.44 1pot 325 76.09 2j9wA 102 76.47 1yckA 175 77.04 d.118.1.1 122968 3gcbA 470 77.18 d.3.1.1 37032 2bbrA 195 77.28 2p5qA 170 77.81 2oyoA 196 77.90 1fgyA 127 79.85 b.55.1.1 26976 1rwyA 109 80.25 a.39.1.4 98002 1mugA 168 80.95 c.18.1.2 31030 1z5yE 149 81.32 c.47.1.10 124498 1uslA 170 81.63 c.121.1.1 99871 1kaeA 434 83.76 c.82.1.2 72247 1zcaA 359 84.09 a.66.1.1,c.37.1.8 124897,124898 1zejA 293 84.43 2ajjA 28 85.33 2z1cA 75 85.38 1xvjA 109 85.60 1st9A 143 86.12 c.47.1.10 98987 1wgeA 83 86.15 g.41.17.1 120972 1co4A 42 86.47 g.47.1.1 45347 1mwwA 128 86.76 d.80.1.4 91483 1ybzA 91 87.07 a.130.1.1 122901 2b1kA 168 87.29 3b8mA 280 88.01 1i5gA 144 88.05 c.47.1.10 61784 1dlcA 584 88.13 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1ldjB 90 88.39 g.44.1.1 73850 1xc1A 309 89.91 c.94.1.1 109543